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[172446_x_at]

Description T16A1.5 /REP_DB=WormBase Gene ID /WP=CE13712 /TR=P91445 /GB=AAB37873.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 0.6
(-3)
A 		31.1
(3)
A 		1.6
(-2.8)
A 		4.5
(-2.2)
A 		31
B 2.1
(-2.9)
A 		2.4
(-2.5)
A 		2
(-3)
A 		7.3
(3)
A 		5
C 2.1
(-2.9)
A 		3.8
(-2.5)
A 		1.4
(-3)
A 		32.6
(3)
A 		31
avr 1.6
(-3) 		12.4
(1.9) 		1.7
(-3) 		14.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		9.3
(-0.4)
A 		1.3
(-3)
A 		19.5
(3)
A 		8
(-0.8)
A 		2.9
(-2.5)
A 		18
B 1
(-3)
A 		5.2
(3)
A 		1.9
(-1.7)
A 		5
(2.7)
A 		1.9
(-1.7)
A 		1
(-3)
A 		4
C 2.4
(-2)
A 		2.2
(-2.1)
A 		2.3
(-2)
A 		5.2
(0.1)
A 		9.2
(3)
A 		1
(-3)
A 		8
avr 2
(-2.7) 		5.6
(-0.1) 		1.8
(-2.9) 		9.9
(3) 		6.4
(0.5) 		1.6
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.2
(-3)
A 		6.8
(3)
A 		0.4
(-2.8)
A 		0.7
(-2.5)
A 		7
B 0.7
(-1.9)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		1.6
(3)
A 		1
C 0.7
(-2.8)
A 		1.1
(-2.3)
A 		0.5
(-3)
A 		5.5
(3)
A 		5
avr 0.5
(-3) 		2.8
(3) 		0.5
(-3) 		2.6
(2.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		3.3
(0.8)
A 		0.3
(-3)
A 		5
(3)
A 		2.4
(-0.3)
A 		0.7
(-2.5)
A 		5
B 0.3
(-3)
A 		1.7
(3)
A 		0.5
(-2.1)
A 		1.3
(1.3)
A 		0.8
(-0.9)
A 		0.4
(-2.6)
A 		1
C 0.9
(-1.7)
A 		0.7
(-2.1)
A 		0.6
(-2.3)
A 		1
(-1.4)
A 		3
(3)
A 		0.3
(-3)
A 		3
avr 0.6
(-2.7) 		1.9
(1.4) 		0.5
(-3) 		2.4
(3) 		2.1
(2.1) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172446_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5129
Sequence Type Exemplar sequence
Representative Public ID T16A1.5 NCBI
Target Description T16A1.5 /REP_DB=WormBase Gene ID /WP=CE13712 /TR=P91445 /GB=AAB37873.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061774
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T16A1.5 ENSEMBL cdna:known chromosome:CEL140:II:2083596:2083827:-1 gene:T16A1.5 None
NM_061774 NCBI Caenorhabditis elegans T16A1.5 (T16A1.5) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016388 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009242 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023693 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000025 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018294 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2083342-2083826(-) 69.89 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.5
Entrez Gene 188545 Entrez gene
SwissProt P91445 EMBL-EBI
WormBase CE32723 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37873 Hypothetical protein T16A1.5 [Caenorhabditis elegans] ref|NP_494175.2| T16A1.5 [Caenorhabditis elegans] 9.0E-29
blast A88065 protein T16A1.5 [imported] - Caenorhabditis elegans 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:172446_X_AT
gtgcaattcggaggaagctgctgataactattgtttttcacataaattatttgaatttgg
ggggtggggacgggtgaagctgggggtaaaacgttgtcataagttgttgaaaaaggttct
ggaactttggcaaaaaatgttgaaaattgccaaaagtcaacgatctttatatgagaaatt
tcgtaaagatgacgtttattcatctatttttatctacttttccaataaacaatttcgatt
tggttcagtaattgttatttttttcaatgtagaccaagggtgggcggcaattgccgttcg
gcaaattgatttttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAATTCGGAGGAAGCTGCTGAT 541 481 15 Antisense
GCTGCTGATAACTATTGTTTTTCAC 233 297 31 Antisense
GAAGCTGGGGGTAAAACGTTGTCAT 93 337 90 Antisense
AATTGCCAAAAGTCAACGATCTTTA 197 173 159 Antisense
TCATCTATTTTTATCTACTTTTCCA 258 619 214 Antisense
TCTACTTTTCCAATAAACAATTTCG 173 607 227 Antisense
AACAATTTCGATTTGGTTCAGTAAT 653 133 242 Antisense
GTTATTTTTTTCAATGTAGACCAAG 248 447 268 Antisense
TGTAGACCAAGGGTGGGCGGCAATT 396 555 282 Antisense
TGGGCGGCAATTGCCGTTCGGCAAA 432 551 295 Antisense
GCCGTTCGGCAAATTGATTTTTCGA 308 279 307 Antisense
Sequence Source Affymetrix Proprietary Database