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[172445_x_at]

Description F20B6.7 /REP_DB=WormBase Gene ID /WP=CE04429 /TR=Q19631 /GB=AAA82315.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 62      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.5
(3)
A 		16.7
(0.5)
A 		12.3
(-1.8)
A 		9.9
(-3)
A 		12
B 6.6
(3)
A 		1.3
(-3)
A 		3.7
(-0.3)
A 		1.5
(-2.8)
A 		5
C 3.1
(-2.4)
A 		4.3
(-1.5)
A 		10.8
(3)
A 		2.2
(-3)
A 		9
avr 10.4
(3) 		7.4
(-0.1) 		8.9
(1.5) 		4.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.6
(-2.6)
A 		18.7
(3)
A 		0.3
(-3)
A 		12.4
(0.9)
A 		2.2
(-2.4)
A 		6.6
(-0.9)
A 		18
B 2.5
(-3)
A 		2.9
(-2.9)
A 		26.6
(1.4)
A 		35.2
(3)
A 		8.6
(-1.9)
A 		2.6
(-3)
A 		33
C 39.3
(3)
A 		14.7
(-1.2)
A 		16.9
(-0.8)
A 		3.8
(-3)
A 		8.1
(-2.3)
A 		15.9
(-1)
A 		36
avr 14.5
(1.6) 		12.1
(0.2) 		14.6
(1.6) 		17.1
(3) 		6.3
(-3) 		8.4
(-1.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.8
(3)
A 		3.6
(-1)
A 		3.2
(-1.4)
A 		1.5
(-3)
A 		6
B 2.1
(3)
A 		0.3
(-3)
A 		0.9
(-1)
A 		0.3
(-3)
A 		2
C 1
(-1.9)
A 		1.2
(-1.6)
A 		3.8
(3)
A 		0.4
(-3)
A 		3
avr 3.6
(3) 		1.7
(-0.9) 		2.6
(0.9) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.3
(-2.8)
A 		6.7
(3)
A 		0.1
(-3)
A 		3.1
(-0.3)
A 		0.7
(-2.5)
A 		1.6
(-1.6)
A 		7
B 0.9
(-3)
A 		1
(-2.9)
A 		6.5
(1)
A 		9.3
(3)
A 		3.5
(-1.1)
A 		1
(-2.9)
A 		8
C 14.6
(3)
A 		4.5
(-1.4)
A 		4.3
(-1.5)
A 		0.8
(-3)
A 		2.6
(-2.2)
A 		5.3
(-1)
A 		14
avr 5.3
(3) 		4.1
(0.6) 		3.6
(-0.4) 		4.4
(1.2) 		2.3
(-3) 		2.6
(-2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172445_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16131
Sequence Type Exemplar sequence
Representative Public ID F20B6.7 NCBI
Target Description F20B6.7 /REP_DB=WormBase Gene ID /WP=CE04429 /TR=Q19631 /GB=AAA82315.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076316 NCBI Caenorhabditis elegans F20B6.7 (F20B6.7) mRNA, complete cds. 11/11 None
SNAP00000010538 ENSEMBL cdna:SNAP chromosome:CEL140:X:4206804:4207295:-1 11/11 None
F20B6.7 ENSEMBL cdna:known chromosome:CEL140:X:4206804:4207451:-1 gene:F20B6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010542 6/11 Cross Hyb Matching Probes None
SNAP00000001733 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4206804-4207272(-) 94.1 100.0
Public Domain and Genome References
Gene Title
Ensembl F20B6.7
Entrez Gene 259700 Entrez gene
SwissProt Q19631 EMBL-EBI
WormBase CE04429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82315 Hypothetical protein F20B6.7 [Caenorhabditis elegans] ref|NP_508717.1| F20B6.7 [Caenorhabditis elegans] 1.0E-58
blast AAA82315 Hypothetical protein F20B6.7 [Caenorhabditis elegans] ref|NP_508717.1| F20B6.7 [Caenorhabditis elegans] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:172445_X_AT
tcgggatggatagatccggggcagatcgggatggactgatttctatcaaacgacgaagga
tggatggtaggaaaggatggatgatgttgaaagctgtgattgaagaaactctggacaatg
ggttgaatgggcaggccaatcaggacgaatggatcgggacaagacgacgacgacgacaaa
caataaggatggatggatggattgggacgatcgaaagcgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGGATGGATAGATCCGGGGCAGA 545 597 65 Antisense
GATCCGGGGCAGATCGGGATGGACT 20 415 77 Antisense
GATCGGGATGGACTGATTTCTATCA 374 417 88 Antisense
TGGACTGATTTCTATCAAACGACGA 551 547 96 Antisense
GATGGATGATGTTGAAAGCTGTGAT 439 407 140 Antisense
GAAGAAACTCTGGACAATGGGTTGA 615 339 166 Antisense
GGACAATGGGTTGAATGGGCAGGCC 403 525 177 Antisense
ATGGGCAGGCCAATCAGGACGAATG 172 51 191 Antisense
GACGAATGGATCGGGACAAGACGAC 272 379 208 Antisense
GACAAGACGACGACGACGACAAACA 496 363 222 Antisense
GGATTGGGACGATCGAAAGCGATTT 407 489 263 Antisense
Sequence Source Affymetrix Proprietary Database