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[172444_x_at]

Description F29C4.4 /REP_DB=WormBase Gene ID /WP=CE17721 /TR=O76363 /GB=AAC19191.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 20
(-1.5)
A 		26.3
(-1)
A 		2.1
(-3)
A 		74.3
(3)
M 		72
B 26.2
(-3)
A 		43.3
(3)
A 		37.7
(1)
P 		31.5
(-1.1)
A 		17
C 10.4
(-2.5)
A 		3.8
(-3)
A 		4.2
(-3)
A 		86.4
(3)
P 		83
avr 18.9
(-2.5) 		24.5
(-1.8) 		14.7
(-3) 		64.1
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 9.4
(-3)
A 		22.4
(0.6)
A 		31.1
(3)
A 		30.8
(2.9)
A 		15.5
(-1.3)
A 		28.7
(2.3)
A 		22
B 2.1
(-3)
A 		25.9
(0.7)
A 		28.1
(1)
A 		41.2
(3)
A 		29.5
(1.2)
A 		19.3
(-0.4)
A 		39
C 20.4
(0.3)
A 		35.2
(3)
A 		3.7
(-2.7)
A 		28.2
(1.7)
A 		1.8
(-3)
A 		13.9
(-0.8)
A 		33
avr 10.6
(-3) 		27.8
(1.5) 		21
(-0.3) 		33.4
(3) 		15.6
(-1.7) 		20.6
(-0.4) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.3
(0.9)
A 		5.7
(0)
A 		0.5
(-3)
A 		10.9
(3)
M 		10
B 8.3
(-0.6)
A 		10.7
(3)
A 		8.7
(-0)
P 		6.7
(-3)
A 		4
C 3.4
(-2)
A 		1.1
(-3)
A 		1.5
(-2.8)
A 		14.6
(3)
P 		14
avr 6.3
(-0.7) 		5.8
(-1.1) 		3.6
(-3) 		10.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.7
(-3)
A 		8
(3)
A 		6.8
(1.9)
A 		7.8
(2.8)
A 		4.7
(-0.1)
A 		7
(2)
A 		6
B 0.7
(-3)
A 		8.6
(1.2)
A 		6.8
(0.2)
A 		10.9
(2.4)
A 		12
(3)
A 		7.2
(0.5)
A 		11
C 7.5
(1.1)
A 		10.7
(3)
A 		1
(-2.8)
A 		5.7
(0)
A 		0.6
(-3)
A 		4.7
(-0.6)
A 		10
avr 3.3
(-3) 		9.1
(3) 		4.9
(-1.3) 		8.1
(2) 		5.8
(-0.4) 		6.3
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172444_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10413
Sequence Type Exemplar sequence
Representative Public ID F29C4.4 NCBI
Target Description F29C4.4 /REP_DB=WormBase Gene ID /WP=CE17721 /TR=O76363 /GB=AAC19191.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067462
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067462 NCBI Caenorhabditis elegans F29C4.4 (F29C4.4) mRNA, complete cds. None
F29C4.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:111465:111862:1 gene:F29C4.4 None
F29C4.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:111624:111862:1 gene:F29C4.4 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:111272-111862(+) 22.54 100.0
Public Domain and Genome References
Gene Title
Ensembl F29C4.4
Entrez Gene 185110 Entrez gene
SwissProt O76363 EMBL-EBI
WormBase CE36591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19191 Hypothetical protein F29C4.4 [Caenorhabditis elegans] ref|NP_499863.2| F29C4.4 [Caenorhabditis elegans] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:172444_X_AT
atgccaaaaaagcctcaaaccctcaaaatagaggggggtgctatagaagttggacgcact
gtattttgtgcgcttttctatgcatcttatcgtccccttgacttgtttcaaacctttttc
ttttgtttgaaagctttgaactttacttttgaaaaaaggaataagaaactcactgatgct
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAAAAAAGCCTCAAACCCTCA 672 37 13 Antisense
AAAGCCTCAAACCCTCAAAATAGAG 420 123 21 Antisense
GAGGGGGGTGCTATAGAAGTTGGAC 42 401 43 Antisense
GAAGTTGGACGCACTGTATTTTGTG 349 337 58 Antisense
GGACGCACTGTATTTTGTGCGCTTT 23 525 64 Antisense
CTGTATTTTGTGCGCTTTTCTATGC 571 237 71 Antisense
TTTTGTGCGCTTTTCTATGCATCTT 330 679 76 Antisense
GTGCGCTTTTCTATGCATCTTATCG 306 479 80 Antisense
CGCTTTTCTATGCATCTTATCGTCC 706 253 83 Antisense
TGAAAGCTTTGAACTTTACTTTTGA 516 571 140 Antisense
GAATAAGAAACTCACTGATGCTCGC 404 327 171 Antisense
Sequence Source Affymetrix Proprietary Database