[Home] | [Total List]

[172442_x_at]

Description Y73F8A.8 /REP_DB=WormBase Gene ID /WP=CE22977 /TR=Q9NA61 /GB=CAB60533.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_high_8_8 > 38      6grp_highest_nonorm > 90      6grp_total > 0      4grp_total > 42      6grp_total_sub > Hat      6grp_cgc > 64      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 59.3
(-3)
A 		265.4
(2.6)
P 		281.2
(3)
P 		203.3
(0.9)
P 		222
B 71.1
(-3)
P 		325.7
(3)
P 		252.6
(1.3)
P 		75.3
(-2.9)
P 		255
C 90.9
(-3)
A 		392.4
(3)
P 		230.4
(-0.2)
P 		289.9
(1)
P 		302
avr 73.8
(-3) 		327.8
(3) 		254.7
(1.3) 		189.5
(-0.3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 98.4
(-3)
P 		203.6
(2.1)
P 		117.3
(-2.1)
P 		123.9
(-1.8)
P 		167.9
(0.4)
P 		222.4
(3)
P 		124
B 106.9
(-3)
P 		266.3
(3)
P 		131.2
(-2.1)
P 		162.8
(-0.9)
P 		183.1
(-0.1)
P 		217.7
(1.2)
P 		159
C 84.7
(-3)
P 		365.4
(3)
P 		116.8
(-2.3)
P 		159.1
(-1.4)
P 		187.2
(-0.8)
P 		204.1
(-0.4)
P 		281
avr 96.7
(-3) 		278.4
(3) 		121.8
(-2.2) 		148.6
(-1.3) 		179.4
(-0.3) 		214.7
(0.9) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 21.6
(-3)
A 		57.6
(1.2)
P 		73.5
(3)
P 		29.8
(-2.1)
P 		52
B 22.7
(-2.4)
P 		80.4
(3)
P 		58.5
(1)
P 		16.1
(-3)
P 		64
C 30.1
(-3)
A 		112.8
(3)
P 		80.3
(0.6)
P 		48.9
(-1.6)
P 		83
avr 24.8
(-3) 		83.6
(3) 		70.8
(1.7) 		31.6
(-2.3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 18.1
(-3)
P 		72.4
(3)
P 		25.6
(-2.2)
P 		31.4
(-1.5)
P 		50.7
(0.6)
P 		54.1
(1)
P 		54
B 37.2
(-2.4)
P 		88.6
(3)
P 		31.9
(-3)
P 		43.1
(-1.8)
P 		74.4
(1.5)
P 		81.2
(2.2)
P 		57
C 31.4
(-2.9)
P 		111.5
(3)
P 		29.7
(-3)
P 		32
(-2.8)
P 		60.6
(-0.7)
P 		68.3
(-0.2)
P 		82
avr 28.9
(-3) 		90.8
(3) 		29.1
(-3) 		35.5
(-2.4) 		61.9
(0.2) 		67.9
(0.8) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172442_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8769
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.8 NCBI
Target Description Y73F8A.8 /REP_DB=WormBase Gene ID /WP=CE22977 /TR=Q9NA61 /GB=CAB60533.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070442(11), NM_070443(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070442 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-90) (pqn-90) mRNA, complete cds. 11/11 A 
NM_070443 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-91) (pqn-91) mRNA, complete cds. 10/11 A 
SNAP00000030809 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15289863:15291224:-1 11/11 None
SNAP00000030810 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15292164:15293405:1 10/11 None
GENEFINDER00000030889 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15292164:15293405:1 10/11 None
GENEFINDER00000030899 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15289863:15291224:-1 11/11 None
Y73F8A.8 ENSEMBL cdna:known chromosome:CEL140:IV:15289863:15291224:-1 gene:Y73F8A.8 11/11 A 
Y73F8A.9 ENSEMBL cdna:known chromosome:CEL140:IV:15291869:15293405:1 gene:Y73F8A.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075864 1/11 Cross Hyb Matching Probes A 
NM_070471 7/11 Cross Hyb Matching Probes A 
NM_070472 6/11 Cross Hyb Matching Probes A 
NM_070473 7/11 Cross Hyb Matching Probes A 
NM_070474 6/11 Cross Hyb Matching Probes A 
NM_073266 1/11 Cross Hyb Matching Probes A 
NM_073267 1/11 Cross Hyb Matching Probes A 
SNAP00000033700 7/11 Cross Hyb Matching Probes None
SNAP00000033701 6/11 Cross Hyb Matching Probes None
SNAP00000033702 7/11 Cross Hyb Matching Probes None
SNAP00000033703 6/11 Cross Hyb Matching Probes None
GENEFINDER00000033774 6/11 Cross Hyb Matching Probes None
GENEFINDER00000033779 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033780 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033786 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022371 2/11 Cross Hyb Matching Probes None
SNAP00000028834 1/11 Cross Hyb Matching Probes None
SNAP00000028835 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028848 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028852 1/11 Cross Hyb Matching Probes None
SNAP00000018681 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018690 1/11 Cross Hyb Matching Probes None
SNAP00000018624 1/11 Cross Hyb Matching Probes None
Y105C5A.3 7/11 Cross Hyb Matching Probes A 
Y105C5A.4 6/11 Cross Hyb Matching Probes A 
Y105C5A.5 7/11 Cross Hyb Matching Probes A 
Y105C5A.6 6/11 Cross Hyb Matching Probes A 
AC3.3 1/11 Cross Hyb Matching Probes A 
AC3.4 1/11 Cross Hyb Matching Probes A 
F19G12.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15292211-15293411(+) 94.93 94.93
chrIV:15289868-15291230(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol pqn-90
pqn-91
Ensembl Y73F8A.8
Y73F8A.9
Entrez Gene 190671 Entrez gene
190672 Entrez gene
SwissProt Q9NA61 EMBL-EBI
Q9NA38 EMBL-EBI
WormBase CE22977 Wormbase
CE25601 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.5801.2.S1_AT similar to activated in Blocked Unfolded protein response ABU-1, Prion-like Q/N-rich domain protein PQN-1, Prion-like Q/N-rich domain protein (45.9 kD) (abu-1) gga
Protein Similarities
Method ID Description E-Value
blast CAB70227 Hypothetical protein Y73F8A.9 [Caenorhabditis elegans] ref|NP_502844.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-91) [Caenorhabditis elegans] 7.0E-47
blast CAB60533 Hypothetical protein Y73F8A.8 [Caenorhabditis elegans] ref|NP_502843.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-90) [Caenorhabditis elegans] 1.0E-40
blast CAB70227 Hypothetical protein Y73F8A.9 [Caenorhabditis elegans] ref|NP_502844.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-91) [Caenorhabditis elegans] 4.0E-37
blast CAB60533 Hypothetical protein Y73F8A.8 [Caenorhabditis elegans] ref|NP_502843.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-90) [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 7.2E-37
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 6.0E-40
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 2.7E-27
Sequence
Target Sequence 
>C. ELEGANS:172442_X_AT
aatgcgtacaacagtgtgctcctcaatgccaacagccatcagctccacagtgccagcagt
gccagaatacttgccagcagtatgctccagtttgccagcaacagtgtgctccacaatgca
cacttccatctgcaccagcttgccaacaatgtcaaacttcgtgccaacagactcaacagt
gccaacaacaatgtattccacaatgtcagcaaccagctgctccacaatgtcagcaatgcc
aatcagcatgccaatctccagttgttgctccacaaattgtgactgtcatcctagaacctt
cagtttctcaatctgctcaatgtgttccacaatgccaacaatcatgccaacaacaatgca
ttcaacaacaacaaccaatgcagcaatgtgctccagcatgcacccaatcatgctatcaat
cgtgctctactgctcaactagtccagatgccatgcctcactcaatcagtcaactcctgct
cttgccagcaaaactattctccgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGTACAACAGTGTGCTCCTCA 590 165 740 Antisense
GTTTGCCAGCAACAGTGTGCTCCAC 436 451 829 Antisense
TCCACAATGCACACTTCCATCTGCA 153 589 849 Antisense
TCTGCACCAGCTTGCCAACAATGTC 435 609 868 Antisense
CCAATCAGCATGCCAATCTCCAGTT 530 277 978 Antisense
TTGTGACTGTCATCCTAGAACCTTC 221 705 1016 Antisense
GAACCTTCAGTTTCTCAATCTGCTC 621 345 1033 Antisense
GCAGCAATGTGCTCCAGCATGCACC 179 313 1119 Antisense
TCATGCTATCAATCGTGCTCTACTG 337 621 1147 Antisense
TGCTCAACTAGTCCAGATGCCATGC 110 581 1170 Antisense
CTTGCCAGCAAAACTATTCTCCGTG 262 219 1220 Antisense
Sequence Source Affymetrix Proprietary Database