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[172441_x_at]

Description Y49E10.7 /REP_DB=WormBase Gene ID /WP=CE22224 /TR=Q9XTT7 /GB=CAB11560.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.8
(-3)
A 		38.9
(1.8)
A 		32.3
(0.9)
A 		47.8
(3)
A 		45
B 3.8
(-2.6)
A 		41.4
(3)
A 		6.7
(-2.2)
A 		1.1
(-3)
A 		40
C 5.5
(-3)
A 		26
(1.6)
A 		7.1
(-2.6)
A 		32.4
(3)
A 		27
avr 4
(-3) 		35.4
(3) 		15.4
(-0.8) 		27.1
(1.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.2
(2.7)
A 		1
(-3)
A 		22.2
(3)
A 		10.1
(-0.4)
A 		11.2
(-0.1)
A 		17.5
(1.7)
A 		21
B 6
(-2.8)
A 		19.2
(0.2)
A 		31.7
(3)
A 		5.2
(-3)
A 		21.8
(0.8)
A 		11.5
(-1.6)
A 		27
C 2.3
(-2.9)
A 		3.8
(-2.6)
A 		1.9
(-3)
A 		17.8
(0.5)
A 		2.9
(-2.8)
A 		29.5
(3)
A 		28
avr 9.8
(-2.1) 		8
(-3) 		18.6
(2.5) 		11
(-1.4) 		12
(-0.9) 		19.5
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1
(-3)
A 		8.4
(2.9)
A 		8.5
(3)
A 		7
(1.8)
A 		8
B 1.2
(-2.4)
A 		10.2
(3)
A 		1.5
(-2.2)
A 		0.2
(-3)
A 		10
C 1.8
(-3)
A 		7.5
(3)
A 		2.5
(-2.3)
A 		5.5
(0.9)
A 		6
avr 1.3
(-3) 		8.7
(3) 		4.2
(-0.6) 		4.2
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.9
(1.8)
A 		0.4
(-3)
A 		4.8
(3)
A 		2.6
(0)
A 		3.4
(1.1)
A 		4.3
(2.3)
A 		4
B 2.1
(-2.4)
A 		6.4
(1)
A 		7.7
(2)
A 		1.4
(-3)
A 		8.9
(3)
A 		4.3
(-0.7)
A 		8
C 0.9
(-2.7)
A 		1.2
(-2.6)
A 		0.5
(-3)
A 		3.6
(-1)
A 		0.9
(-2.7)
A 		9.9
(3)
A 		9
avr 2.3
(-3) 		2.7
(-2.4) 		4.3
(0.1) 		2.5
(-2.7) 		4.4
(0.2) 		6.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172441_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6608
Sequence Type Exemplar sequence
Representative Public ID Y49E10.7 NCBI
Target Description Y49E10.7 /REP_DB=WormBase Gene ID /WP=CE22224 /TR=Q9XTT7 /GB=CAB11560.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067211 NCBI Caenorhabditis elegans Y49E10.7 (Y49E10.7) mRNA, complete cds. 11/11 None
SNAP00000016072 ENSEMBL cdna:SNAP chromosome:CEL140:III:12377664:12378677:-1 9/11 None
Y49E10.7 ENSEMBL cdna:known chromosome:CEL140:III:12378032:12378677:-1 gene:Y49E10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070266 3/11 Cross Hyb Matching Probes A 
NM_070237 4/11 Cross Hyb Matching Probes A 
SNAP00000026157 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026169 3/11 Cross Hyb Matching Probes None
SNAP00000031584 4/11 Cross Hyb Matching Probes None
GENEFINDER00000031588 4/11 Cross Hyb Matching Probes None
Y45F10C.1 4/11 Cross Hyb Matching Probes A 
B0513.6 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12378027-12378673(-) 100.0 100.0
chrIV:13657261-13657929(-) 91.17 91.17
Public Domain and Genome References
Gene Title
Ensembl Y49E10.7
Entrez Gene 190066 Entrez gene
SwissProt Q9XTT7 EMBL-EBI
WormBase CE22224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16477 Hypothetical protein Y45F10C.1 [Caenorhabditis elegans] ref|NP_502638.1| Y45F10C.1 [Caenorhabditis elegans] 1.0E-100
blast CAB05118 Hypothetical protein B0513.6 [Caenorhabditis elegans] ref|NP_502667.1| B0513.6 [Caenorhabditis elegans] 4.0E-95
blast CAB11560 Hypothetical protein Y49E10.7 [Caenorhabditis elegans] ref|NP_499612.1| Y49E10.7 [Caenorhabditis elegans] 5.0E-95
blast CAB11560 Hypothetical protein Y49E10.7 [Caenorhabditis elegans] ref|NP_499612.1| Y49E10.7 [Caenorhabditis elegans] 5.0E-75
blast CAB16477 Hypothetical protein Y45F10C.1 [Caenorhabditis elegans] ref|NP_502638.1| Y45F10C.1 [Caenorhabditis elegans] 4.0E-71
blast CAB05118 Hypothetical protein B0513.6 [Caenorhabditis elegans] ref|NP_502667.1| B0513.6 [Caenorhabditis elegans] 5.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 2.2E-13
Pfam IPR006570 EMBL-EBI SPK 4.9E-14
Pfam IPR006570 EMBL-EBI SPK 8.6E-11
Pfam IPR006570 EMBL-EBI SPK 1.3E-48
Sequence
Target Sequence 
>C. ELEGANS:172441_X_AT
acaatttcacagaatcgaacagcttggcagtgttcagctcgacgacaaaaatcgtatatg
caaattcacatcatttgatgggcagcttgagttacaaggaagacatggtcgttgctcagt
agatatagaaagccccgagtttgtccgatttgtccaatttcttgtgaacaagactgaaaa
gtccaacgaaccaattgatcagcggagggtgttcgggaagtttcgtgctctcgagcatgg
tgtacttgatgttaccacctataggaacagattccatggagttgtggcacggaatatgat
tcttttggacaacttatcaatcgatttgagcatccgtatgatttttgcgttgagtgggaa
gatggagaccaattttctttctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTTCACAGAATCGAACAGCTT 219 115 42 Antisense
AACAGCTTGGCAGTGTTCAGCTCGA 118 137 59 Antisense
ACATCATTTGATGGGCAGCTTGAGT 67 105 109 Antisense
GAAGACATGGTCGTTGCTCAGTAGA 664 339 140 Antisense
TATAGAAAGCCCCGAGTTTGTCCGA 119 655 165 Antisense
GTTTGTCCGATTTGTCCAATTTCTT 566 451 180 Antisense
TGTTCGGGAAGTTTCGTGCTCTCGA 447 561 251 Antisense
TGCTCTCGAGCATGGTGTACTTGAT 190 581 267 Antisense
GTACTTGATGTTACCACCTATAGGA 74 461 283 Antisense
TTGAGCATCCGTATGATTTTTGCGT 610 703 367 Antisense
GATGGAGACCAATTTTCTTTCTGAA 562 407 402 Antisense
Sequence Source Affymetrix Proprietary Database