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[172440_x_at]

Description F46F5.6 /REP_DB=WormBase Gene ID /WP=CE19422 /TR=Q9TXY1 /GB=AAC78182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 68.6
(-1.9)
M 		58
(-2.6)
A 		52
(-3)
A 		141.4
(3)
P 		89
B 40
(-1.1)
A 		29.5
(-3)
A 		62.2
(3)
A 		57.8
(2.2)
A 		33
C 51.1
(-3)
A 		69.3
(-1.9)
A 		106.6
(0.2)
M 		153.9
(3)
P 		103
avr 53.2
(-2.9) 		52.3
(-3) 		73.6
(-1) 		117.7
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 94.7
(-0.3)
A 		92.9
(-0.4)
P 		98.5
(0)
P 		60.5
(-3)
A 		78.5
(-1.6)
P 		135.4
(3)
P 		75
B 61.4
(1.7)
A 		63.7
(2.2)
A 		66.9
(3)
A 		42.1
(-3)
A 		58.6
(1)
M 		54.1
(-0.1)
M 		25
C 74.3
(1.9)
P 		63.7
(-1)
P 		59.6
(-2.1)
M 		56.3
(-3)
A 		75.7
(2.2)
P 		78.5
(3)
P 		22
avr 76.8
(0.9) 		73.4
(0.4) 		75
(0.6) 		53
(-3) 		70.9
(-0) 		89.3
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 25
(3)
M 		12.6
(-3)
A 		13.6
(-2.5)
A 		20.7
(0.9)
P 		12
B 12.8
(1.6)
A 		7.3
(-3)
A 		14.4
(3)
A 		12.3
(1.2)
A 		7
C 16.9
(-3)
A 		19.9
(-2.1)
A 		37.2
(3)
M 		26
(-0.3)
P 		20
avr 18.2
(0.5) 		13.3
(-3) 		21.7
(3) 		19.7
(1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 17.5
(-2.3)
A 		33.1
(3)
P 		21.5
(-0.9)
P 		15.3
(-3)
A 		23.7
(-0.2)
P 		33
(3)
P 		18
B 21.4
(1.9)
A 		21.2
(1.8)
A 		16.3
(-0.6)
A 		11.2
(-3)
A 		23.8
(3)
M 		20.2
(1.3)
M 		13
C 27.5
(3)
P 		19.4
(-0)
P 		15.2
(-1.6)
M 		11.3
(-3)
A 		24.5
(1.9)
P 		26.3
(2.6)
P 		16
avr 22.1
(1.1) 		24.6
(2.2) 		17.7
(-0.8) 		12.6
(-3) 		24
(1.9) 		26.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172440_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5019
Sequence Type Exemplar sequence
Representative Public ID F46F5.6 NCBI
Target Description F46F5.6 /REP_DB=WormBase Gene ID /WP=CE19422 /TR=Q9TXY1 /GB=AAC78182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061418 NCBI Caenorhabditis elegans F46F5.6 (F46F5.6) mRNA, complete cds. 11/11 None
SNAP00000029523 ENSEMBL cdna:SNAP chromosome:CEL140:II:814523:814843:-1 11/11 None
GENEFINDER00000029528 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:814523:814843:-1 11/11 None
F46F5.6 ENSEMBL cdna:known chromosome:CEL140:II:814523:814843:-1 gene:F46F5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061421 3/11 Cross Hyb Matching Probes A 
SNAP00000029525 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029533 3/11 Cross Hyb Matching Probes None
F46F5.9 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:814522-814843(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.6
Entrez Gene 185859 Entrez gene
SwissProt Q9TXY1 EMBL-EBI
WormBase CE19422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78182 Hypothetical protein F46F5.6 [Caenorhabditis elegans] ref|NP_493819.1| F46F5.6 [Caenorhabditis elegans] 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493819.1 2 7-24,83-105
F46F5.6 2 7-24,83-105
SNAP00000029523 2 7-24,83-105
GENEFINDER00000029528 2 7-24,83-105
Sequence
Target Sequence 
>C. ELEGANS:172440_X_AT
atgagacgtcaaacggctgccatctttgtcctccttggtcttctcgccgtctttgtggta
caaggatcaactgacgacactgatgcatctgaagacactgctgaatctccagctccagat
aatgctaatacggtcgcccctaacgtcggcgctgctagcacatcaactgcaaaagaatca
gcaactgatccaccaccggctggaactccagctcctgaaaaagccgctgaagctgaagca
gctgaagcaactgtagcatcattcactccgatctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGACGTCAAACGGCTGCCATCT 72 47 13 Antisense
TCTCGCCGTCTTTGTGGTACAAGGA 616 607 54 Antisense
GGTACAAGGATCAACTGACGACACT 13 505 69 Antisense
AACTGACGACACTGATGCATCTGAA 159 143 81 Antisense
ATCTGAAGACACTGCTGAATCTCCA 96 33 99 Antisense
GAATCTCCAGCTCCAGATAATGCTA 73 329 115 Antisense
AGATAATGCTAATACGGTCGCCCCT 601 63 129 Antisense
CGCTGCTAGCACATCAACTGCAAAA 377 255 162 Antisense
AGAATCAGCAACTGATCCACCACCG 3 77 186 Antisense
GAACTCCAGCTCCTGAAAAAGCCGC 629 347 215 Antisense
GTAGCATCATTCACTCCGATCTACT 537 455 265 Antisense
Sequence Source Affymetrix Proprietary Database