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[172435_x_at]

Description C16C4.8 /REP_DB=WormBase Gene ID /WP=CE08204 /TR=O16556 /GB=AAB93654.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 23.9
(3)
A 		2.5
(-3)
A 		4.6
(-2.4)
A 		23.6
(2.9)
A 		21
B 1.1
(-3)
A 		4.6
(-2.3)
A 		4.7
(-2.3)
A 		31
(3)
A 		30
C 13
(-1.9)
A 		23.5
(-0.4)
A 		5
(-3)
A 		47.7
(3)
A 		43
avr 12.7
(-1.4) 		10.2
(-1.9) 		4.8
(-3) 		34.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41.5
(3)
A 		2.5
(-2.9)
A 		1.7
(-3)
A 		10.2
(-1.7)
A 		21.8
(0)
A 		1.9
(-3)
A 		40
B 2.7
(-2.7)
A 		2.4
(-2.8)
A 		3.5
(-2.4)
A 		8.7
(-0.4)
A 		17.4
(3)
A 		1.9
(-3)
A 		16
C 0.7
(-3)
A 		4.2
(-2)
A 		4.2
(-2)
A 		22.5
(3)
A 		2
(-2.6)
A 		1.3
(-2.8)
A 		22
avr 15
(3) 		3
(-2.4) 		3.1
(-2.4) 		13.8
(2.5) 		13.7
(2.4) 		1.7
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.7
(3)
A 		0.6
(-3)
A 		1.2
(-2.6)
A 		3.5
(-0.9)
A 		8
B 0.3
(-3)
A 		1.1
(-2.2)
A 		1.1
(-2.2)
A 		6.6
(3)
A 		6
C 4.3
(-0.5)
A 		6.8
(1.9)
A 		1.7
(-3)
A 		8
(3)
A 		6
avr 4.4
(1) 		2.8
(-1.1) 		1.3
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.6
(3)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		2.6
(-1.2)
A 		6.6
(2.2)
A 		0.5
(-2.9)
A 		7
B 0.9
(-2.8)
A 		0.8
(-2.9)
A 		0.9
(-2.8)
A 		2.3
(-1.5)
A 		7.1
(3)
A 		0.7
(-3)
A 		6
C 0.3
(-3)
A 		1.3
(-1.6)
A 		1.1
(-1.9)
A 		4.5
(3)
A 		0.7
(-2.4)
A 		0.4
(-2.9)
A 		4
avr 2.9
(0.3) 		1
(-2.3) 		0.8
(-2.6) 		3.1
(0.6) 		4.8
(3) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172435_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5782
Sequence Type Exemplar sequence
Representative Public ID C16C4.8 NCBI
Target Description C16C4.8 /REP_DB=WormBase Gene ID /WP=CE08204 /TR=O16556 /GB=AAB93654.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061705 NCBI Caenorhabditis elegans C16C4.8 (C16C4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000026922 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1877581:1878761:-1 10/11 None
C16C4.8 ENSEMBL cdna:known chromosome:CEL140:II:1877910:1878761:-1 gene:C16C4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061707 1/11 Cross Hyb Matching Probes A 
SNAP00000026902 8/11 Cross Hyb Matching Probes None
SNAP00000026904 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026923 1/11 Cross Hyb Matching Probes None
C16C4.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1877908-1878760(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.8
Entrez Gene 182662 Entrez gene
SwissProt O16556 EMBL-EBI
WormBase CE08204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93654 Hypothetical protein C16C4.8 [Caenorhabditis elegans] ref|NP_494106.1| C16C4.8 [Caenorhabditis elegans] 1.0E-107
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-104
blast AAB93654 Hypothetical protein C16C4.8 [Caenorhabditis elegans] ref|NP_494106.1| C16C4.8 [Caenorhabditis elegans] 6.0E-95
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 8.0E-95
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 9.0E-65
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 6.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 6.0E-41
Pfam IPR002083 EMBL-EBI MATH 2.2E-7
Pfam IPR002083 EMBL-EBI MATH 1.1E-46
Sequence
Target Sequence 
>C. ELEGANS:172435_X_AT
gaccaattcctgcaaagagtttgtggtaagcgaaaatgttaaaaatatttcacggtttgt
tgatgaagaaagttactacactaacatagaagaacgattcaatattccatgttattattt
gagatgcgaaaaggaagaatgtgaaaacaaaaaatggtcgattgaaactgagttcacatt
gaaattggtgtcacacaatggtaaaagtttgatgaaaagcgggaagtacacatttgaaaa
ggctgatggatttggttggtttatattcatcagttggaatgatttggaaagtgattatgt
ggttaatgatagtattgtagttgaagctcatgtcaaaataattaaaataaacgactctcc
gtgcattgactctcagtgcattgaaaacgaaagtcagaaaatatttctgttgaatcacac
tgttgaaaatgtttcgagcattagagaaggaggttactatttcaccaaaactgagaaacg
gtttaatattccatggtatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAATTCCTGCAAAGAGTTTGTG 491 381 15 Antisense
AAAATATTTCACGGTTTGTTGATGA 671 133 56 Antisense
GAAAAGCGGGAAGTACACATTTGAA 469 351 228 Antisense
AAGGCTGATGGATTTGGTTGGTTTA 412 161 253 Antisense
GGTTGGTTTATATTCATCAGTTGGA 63 509 268 Antisense
AATAAACGACTCTCCGTGCATTGAC 663 169 360 Antisense
TCTCCGTGCATTGACTCTCAGTGCA 442 609 370 Antisense
GTGCATTGACTCTCAGTGCATTGAA 106 481 375 Antisense
ATTTCTGTTGAATCACACTGTTGAA 625 15 417 Antisense
GAGAAGGAGGTTACTATTTCACCAA 584 389 458 Antisense
AACGGTTTAATATTCCATGGTATGT 523 143 491 Antisense
Sequence Source Affymetrix Proprietary Database