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[172432_x_at]

Description D2024.9 /REP_DB=WormBase Gene ID /WP=CE04298 /TR=Q18977 /GB=AAA82293.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 73
(-2)
A 		64.7
(-2.3)
A 		40.6
(-3)
A 		244.2
(3)
P 		204
B 128.6
(0.3)
P 		28.1
(-2.9)
A 		23.8
(-3)
A 		215
(3)
P 		191
C 78.5
(-2.8)
P 		82.4
(-2.7)
A 		67.9
(-3)
A 		398.3
(3)
P 		330
avr 93.4
(-1.8) 		58.4
(-2.6) 		44.1
(-3) 		285.8
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 28.7
(-3)
A 		86.3
(1.4)
A 		102.8
(2.6)
P 		101.1
(2.5)
P 		87
(1.4)
P 		107.4
(3)
A 		79
B 57.6
(0)
A 		73.1
(1.1)
A 		69.8
(0.8)
A 		74.6
(1.2)
A 		101.4
(3)
P 		13.6
(-3)
A 		88
C 23.1
(-3)
A 		83.8
(1.7)
P 		69.9
(0.6)
P 		34.3
(-2.1)
A 		27.5
(-2.7)
A 		100.8
(3)
P 		78
avr 36.5
(-3) 		81.1
(3) 		80.8
(3) 		70
(1.5) 		72
(1.8) 		73.9
(2) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 26.6
(0.8)
A 		14
(-2.2)
A 		10.6
(-3)
A 		35.7
(3)
P 		25
B 41
(2.3)
P 		6.9
(-2.8)
A 		5.5
(-3)
A 		45.8
(3)
P 		40
C 26
(-2.7)
P 		23.7
(-3)
A 		23.7
(-3)
A 		67.2
(3)
P 		44
avr 31.2
(-0) 		14.9
(-2.7) 		13.3
(-3) 		49.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.3
(-3)
A 		30.7
(3)
A 		22.4
(1)
P 		25.6
(1.8)
P 		26.2
(1.9)
P 		26.1
(1.9)
A 		25
B 20
(-0.5)
A 		24.3
(0.2)
A 		16.9
(-1)
A 		19.8
(-0.6)
A 		41.2
(3)
P 		5.1
(-3)
A 		36
C 8.6
(-2.6)
A 		25.6
(1.2)
P 		17.8
(-0.6)
P 		6.9
(-3)
A 		8.9
(-2.6)
A 		33.7
(3)
P 		27
avr 11.3
(-3) 		26.9
(3) 		19
(-0) 		17.4
(-0.7) 		25.4
(2.4) 		21.6
(1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172432_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8852
Sequence Type Exemplar sequence
Representative Public ID D2024.9 NCBI
Target Description D2024.9 /REP_DB=WormBase Gene ID /WP=CE04298 /TR=Q18977 /GB=AAA82293.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062798, NM_074099
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK84.4 ENSEMBL cdna:known chromosome:CEL140:II:6008414:6008718:-1 gene:ZK84.4 None
AH10.4 ENSEMBL cdna:known chromosome:CEL140:V:14139936:14140228:-1 gene:AH10.4 None
NM_074099 NCBI Caenorhabditis elegans AH10.4 (AH10.4) mRNA, complete cds. None
NM_062798 NCBI Caenorhabditis elegans ZK84.4 (ZK84.4) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037835 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043115 1/11 Cross Hyb Matching Probes None
SNAP00000026717 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026721 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011197 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002796 3/11 Cross Hyb Matching Probes None
GENEFINDER00000002807 3/11 Cross Hyb Matching Probes None
SNAP00000009704 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009726 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019529 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031810 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035480 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009498 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7251436-7253854(-) 33.66 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK84.4
AH10.4
Entrez Gene 353456 Entrez gene
SwissProt Q9XVT8 EMBL-EBI
WormBase CE07658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02684 Hypothetical protein AH10.4 [Caenorhabditis elegans] ref|NP_506500.1| AH10.4 [Caenorhabditis elegans] 4.0E-22
blast NP_495199 ZK84.4 [Caenorhabditis elegans] 4.0E-22
blast NP_495199 ZK84.4 [Caenorhabditis elegans] 1.0E-21
blast CAB02684 Hypothetical protein AH10.4 [Caenorhabditis elegans] ref|NP_506500.1| AH10.4 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495199.1 1 42-64
ZK84.4 1 42-64
Sequence
Target Sequence 
>C. ELEGANS:172432_X_AT
gctggaatcaaaaaggaccccgccttttttcttttagatttcttcaaaatacacatcaac
tgtgaacttttgaaacatgcatatcacagggggagtagagtttgtggggaaatatatgtt
tctgactctaattttgcccctgatgccgaatatcgatgtgaaaaaattcaaaaaaatttc
cctgatttaatattaatttttaaaatccgaaaattcattggatgcctatatgtgagtttt
caaacgctgaattttcccgccagagacgccccgcccacgaaaccgtgccgcaagtgtggg
tttacgagcacaaattcgacgggaaacaaggtggaggcaaccgtggacaataaatctatt
acttattcgtgtgtaatgcttttgttttttagacaaaacaagtccatcgaaagaacttca
ggaactccaacaaaggaagaagaaaacttgctgcacaacggaacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGAATCAAAAAGGACCCCGCCT 335 239 58 Antisense
ATTTCTTCAAAATACACATCAACTG 230 15 95 Antisense
GAAACATGCATATCACAGGGGGAGT 371 355 129 Antisense
ATGTTTCTGACTCTAATTTTGCCCC 4 49 173 Antisense
TGCCCCTGATGCCGAATATCGATGT 387 585 192 Antisense
TCAAACGCTGAATTTTCCCGCCAGA 499 629 297 Antisense
CCCACGAAACCGTGCCGCAAGTGTG 410 255 331 Antisense
GCCGCAAGTGTGGGTTTACGAGCAC 495 285 344 Antisense
GGTTTACGAGCACAAATTCGACGGG 241 505 356 Antisense
CAAGGTGGAGGCAACCGTGGACAAT 87 179 384 Antisense
AAACTTGCTGCACAACGGAACAATT 157 127 501 Antisense
Sequence Source Affymetrix Proprietary Database