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[172429_x_at]

Description F52E10.4 /REP_DB=WormBase Gene ID /WP=CE03396 /TR=Q20670 /GB=CAA91055.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 51      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 62      4grp_total > 13      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 341.9
(-0.1)
P 		289
(-1)
P 		172.8
(-3)
P 		526.7
(3)
P 		354
B 349.9
(0.9)
P 		251.4
(-3)
P 		316.7
(-0.4)
P 		402.2
(3)
P 		151
C 338.8
(3)
P 		251.3
(-0.6)
P 		193.1
(-3)
P 		336.8
(2.9)
P 		146
avr 343.5
(0.6) 		263.9
(-1.9) 		227.5
(-3) 		421.9
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 182.2
(-1.2)
P 		202.3
(-0.5)
P 		302.4
(3)
P 		296.8
(2.8)
P 		182
(-1.2)
P 		131.8
(-3)
P 		171
B 165.6
(-1.8)
P 		214.3
(-0.1)
P 		307.1
(3)
P 		264.7
(1.6)
P 		233
(0.5)
P 		129.1
(-3)
P 		178
C 191.4
(-0.1)
P 		182.8
(-0.4)
P 		271.2
(3)
P 		259.8
(2.5)
P 		272.5
(3)
P 		113
(-3)
P 		160
avr 179.7
(-1) 		199.8
(-0.3) 		293.6
(3) 		273.8
(2.3) 		229.2
(0.7) 		124.6
(-3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 124.5
(3)
P 		62.7
(-1.7)
P 		45.2
(-3)
P 		77.1
(-0.6)
P 		79
B 111.6
(3)
P 		62.1
(-3)
P 		73.4
(-1.6)
P 		85.7
(-0.1)
P 		50
C 112.1
(3)
P 		72.2
(-1.3)
P 		67.3
(-1.9)
P 		56.8
(-3)
P 		55
avr 116.1
(3) 		65.7
(-2.6) 		62
(-3) 		73.2
(-1.8) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 33.6
(-2.8)
P 		71.9
(2.5)
P 		65.9
(1.7)
P 		75.3
(3)
P 		54.9
(0.2)
P 		32.1
(-3)
P 		43
B 57.6
(-1.8)
P 		71.3
(-0)
P 		74.6
(0.4)
P 		70.1
(-0.2)
P 		94.7
(3)
P 		48.1
(-3)
P 		47
C 71
(1)
P 		55.8
(-0.9)
P 		69
(0.7)
P 		52.3
(-1.3)
P 		88.2
(3)
P 		37.8
(-3)
P 		50
avr 54.1
(-0.8) 		66.3
(1.1) 		69.8
(1.6) 		65.9
(1) 		79.3
(3) 		39.3
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172429_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17316
Sequence Type Exemplar sequence
Representative Public ID F52E10.4 NCBI
Target Description F52E10.4 /REP_DB=WormBase Gene ID /WP=CE03396 /TR=Q20670 /GB=CAA91055.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078252 NCBI Caenorhabditis elegans F52E10.4 (F52E10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000003306 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16286036:16286695:-1 11/11 None
F52E10.4 ENSEMBL cdna:known chromosome:CEL140:X:16286036:16286671:-1 gene:F52E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16286035-16286671(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E10.4
Entrez Gene 181702 Entrez gene
SwissProt Q20670 EMBL-EBI
WormBase CE03396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91055 Hypothetical protein F52E10.4 [Caenorhabditis elegans] ref|NP_510653.1| F52E10.4 [Caenorhabditis elegans] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:172429_X_AT
ccagcgtcatttccaaatcctagagcaactttgccaggacactaaagatgatagaaactg
tgatgatggcaaaaaggaggaatttgaagaaccaccaccaagacctccaacaagacgatg
catgttctaccgagacgacacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCGTCATTTCCAAATCCTAGAG 211 273 36 Antisense
GCGTCATTTCCAAATCCTAGAGCAA 411 291 39 Antisense
AATCCTAGAGCAACTTTGCCAGGAC 574 165 51 Antisense
GAGCAACTTTGCCAGGACACTAAAG 201 391 58 Antisense
GATGATAGAAACTGTGATGATGGCA 597 409 82 Antisense
GGAGGAATTTGAAGAACCACCACCA 641 515 111 Antisense
ATTTGAAGAACCACCACCAAGACCT 484 11 117 Antisense
CACCAAGACCTCCAACAAGACGATG 165 203 131 Antisense
AAGACCTCCAACAAGACGATGCATG 44 153 135 Antisense
GACGATGCATGTTCTACCGAGACGA 403 379 149 Antisense
GCATGTTCTACCGAGACGACACAGA 213 311 155 Antisense
Sequence Source Affymetrix Proprietary Database