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[172426_x_at]

Description F20A1.1 /REP_DB=WormBase Gene ID /WP=CE07091 /TR=Q19615 /GB=AAA96131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 36      6grp_total > 50      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3217
1 2 3 4 range
A 4941.9
(3)
P 		3948.5
(1)
P 		3303.3
(-0.2)
P 		1915.9
(-3)
P 		3026
B 4071.9
(3)
P 		3855.5
(2.4)
P 		3438.1
(1.1)
P 		2038.1
(-3)
P 		2034
C 4645.2
(3)
P 		4104.9
(1.9)
P 		3470.4
(0.6)
P 		1724.5
(-3)
P 		2921
avr 4553
(3) 		3969.6
(1.7) 		3403.9
(0.4) 		1892.8
(-3) 		2660

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1999
1 2 3 4 5 6 range
A 3836.6
(0.4)
P 		3706.4
(0)
P 		4346.9
(1.9)
P 		4701.2
(3)
P 		2701.8
(-3)
P 		3234.3
(-1.4)
P 		1999
B 3998.3
(1.4)
P 		3351.5
(-2.8)
P 		4241.6
(3)
P 		3601
(-1.2)
P 		3326
(-3)
P 		3697.8
(-0.6)
P 		916
C 4139.9
(1.2)
P 		3274.2
(-3)
P 		4515.7
(3)
P 		4027.9
(0.6)
P 		3421
(-2.3)
P 		3830.1
(-0.3)
P 		1242
avr 3991.6
(1.1) 		3444
(-1.6) 		4368.1
(3) 		4110
(1.7) 		3149.6
(-3) 		3587.4
(-0.8) 		1219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1519
1 2 3 4 range
A 1799.3
(3)
P 		857.1
(-0.7)
P 		863.6
(-0.7)
P 		280.4
(-3)
P 		1519
B 1298.5
(3)
P 		952.2
(0.6)
P 		796.7
(-0.5)
P 		434.3
(-3)
P 		864
C 1537.7
(3)
P 		1180.2
(1.3)
P 		1209.5
(1.4)
P 		290.8
(-3)
P 		1247
avr 1545.2
(3) 		996.5
(0.3) 		956.6
(0.1) 		335.2
(-3) 		1210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 707.2
(-3)
P 		1318.2
(3)
P 		946.7
(-0.6)
P 		1192.3
(1.8)
P 		815.3
(-1.9)
P 		787.5
(-2.2)
P 		611
B 1391.2
(3)
P 		1115.6
(-0.8)
P 		1030
(-2)
P 		953.8
(-3)
P 		1351.3
(2.5)
P 		1378.9
(2.8)
P 		437
C 1534.5
(3)
P 		999
(-1.4)
P 		1149.3
(-0.2)
P 		810
(-3)
P 		1107
(-0.5)
P 		1282.2
(0.9)
P 		725
avr 1211
(3) 		1144.3
(1.2) 		1042
(-1.5) 		985.4
(-3) 		1091.2
(-0.2) 		1149.5
(1.4) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172426_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12050
Sequence Type Exemplar sequence
Representative Public ID F20A1.1 NCBI
Target Description F20A1.1 /REP_DB=WormBase Gene ID /WP=CE07091 /TR=Q19615 /GB=AAA96131.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072386 NCBI Caenorhabditis elegans F20A1.1 (F20A1.1) mRNA, complete cds. 11/11 None
SNAP00000026806 ENSEMBL cdna:SNAP chromosome:CEL140:V:7054321:7054712:1 11/11 None
GENEFINDER00000026808 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7054443:7054712:1 9/11 None
F20A1.1 ENSEMBL cdna:known chromosome:CEL140:V:7054295:7054774:1 gene:F20A1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7054321-7054713(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20A1.1
Entrez Gene 179090 Entrez gene
SwissProt Q19615 EMBL-EBI
WormBase CE07091 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504787 F20A1.1 [Caenorhabditis elegans] gb|AAA96131.1| Hypothetical protein F20A1.1 [Caenorhabditis elegans] 9.0E-30
blast NP_504787 F20A1.1 [Caenorhabditis elegans] gb|AAA96131.1| Hypothetical protein F20A1.1 [Caenorhabditis elegans] 4.0E-22
blast CAE71990 Hypothetical protein CBG19065 [Caenorhabditis briggsae] 4.0E-20
blast CAA16166 Hypothetical protein F57E7.1 [Caenorhabditis elegans] ref|NP_507169.1| F57E7.1 [Caenorhabditis elegans] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:172426_X_AT
tcgtttatgctcatcaaatgccatcagctgatgagatgaaggccaagctcgttgagggtg
gagtctccgaggctgctgccgctggactcgttgaaatcggagataagtacaagagccaat
tccaggctctcaccaagggagatcatgaagctggaaagaaagttttcgatagcatgaagt
ccgagtctgatgcctacatcgccacccaatctgaagctgatcagaccgcttacaaagcat
tcgttgagaaggccaaggagcacttccaagctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTTATGCTCATCAAATGCCATC 44 605 50 Antisense
GATGAAGGCCAAGCTCGTTGAGGGT 660 411 84 Antisense
AGCTCGTTGAGGGTGGAGTCTCCGA 617 79 95 Antisense
TGAGGGTGGAGTCTCCGAGGCTGCT 440 565 102 Antisense
CTGCCGCTGGACTCGTTGAAATCGG 354 231 125 Antisense
CAAGAGCCAATTCCAGGCTCTCACC 245 185 159 Antisense
TCCAGGCTCTCACCAAGGGAGATCA 330 591 170 Antisense
TGAAGTCCGAGTCTGATGCCTACAT 118 571 224 Antisense
CGCCACCCAATCTGAAGCTGATCAG 45 259 249 Antisense
AGCTGATCAGACCGCTTACAAAGCA 293 79 264 Antisense
GGCCAAGGAGCACTTCCAAGCTCAC 256 543 300 Antisense
Sequence Source Affymetrix Proprietary Database