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[172425_x_at] cytochrome P450

Description Y80D3A.6 /REP_DB=WormBase Gene ID /WP=CE23109 /TR=Q9U1R4 /GB=CAB60437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      6grp_total > 82      4grp_total > 41      6grp_cgc > 74      6grp_high1_sub > 04      6grp_cgc_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 2.7
(-3)
A 		87.3
(2.6)
P 		93.3
(3)
P 		56
(0.5)
M 		91
B 31.1
(-3)
A 		63.2
(1.4)
P 		74.6
(3)
P 		42.5
(-1.4)
M 		44
C 26.8
(-3)
A 		88.2
(1.6)
P 		107.4
(3)
P 		47.6
(-1.5)
A 		81
avr 20.2
(-3) 		79.6
(2) 		91.8
(3) 		48.7
(-0.6) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 53.4
(0.1)
A 		63.6
(1.6)
P 		73.3
(3)
P 		66.9
(2.1)
M 		68.9
(2.4)
A 		32.6
(-3)
A 		41
B 45.2
(-3)
P 		81.5
(0.2)
P 		70.5
(-0.8)
P 		113.6
(3)
P 		96.4
(1.5)
P 		67.8
(-1)
P 		68
C 47.6
(-2.6)
P 		118.6
(3)
P 		80.8
(0)
P 		62.3
(-1.4)
A 		112
(2.5)
P 		42.2
(-3)
P 		76
avr 48.7
(-2.8) 		87.9
(2.4) 		74.9
(0.7) 		80.9
(1.5) 		92.4
(3) 		47.5
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1
(-3)
A 		18.9
(1.6)
P 		24.4
(3)
P 		8.2
(-1.2)
M 		23
B 9.9
(-2.4)
A 		15.6
(1.8)
P 		17.3
(3)
P 		9.1
(-3)
M 		8
C 8.9
(-2.8)
A 		25.4
(0.6)
P 		37.4
(3)
P 		8
(-3)
A 		29
avr 6.6
(-3) 		20
(1.1) 		26.4
(3) 		8.4
(-2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9.8
(-2.2)
A 		22.6
(3)
P 		16
(0.3)
P 		17
(0.7)
M 		20.8
(2.3)
A 		7.9
(-3)
A 		15
B 15.7
(-3)
P 		27.1
(-0.1)
P 		17.1
(-2.6)
P 		30.1
(0.7)
P 		39.2
(3)
P 		25.3
(-0.5)
P 		24
C 17.6
(-1.7)
P 		36.2
(3)
P 		20.6
(-0.9)
P 		12.5
(-3)
A 		36.2
(3)
P 		14.1
(-2.6)
P 		24
avr 14.4
(-3) 		28.6
(1.8) 		17.9
(-1.8) 		19.9
(-1.1) 		32.1
(3) 		15.8
(-2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172425_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14263
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.6 NCBI
Target Description Y80D3A.6 /REP_DB=WormBase Gene ID /WP=CE23109 /TR=Q9U1R4 /GB=CAB60437.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075287 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-42A1) (cyp-42A1) mRNA, complete cds. 11/11 None
SNAP00000017348 ENSEMBL cdna:SNAP chromosome:CEL140:V:18920224:18920406:1 11/11 None
GENEFINDER00000017386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18914615:18920406:1 11/11 None
Y80D3A.5 ENSEMBL cdna:known chromosome:CEL140:V:18914612:18920406:1 gene:Y80D3A.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18920223-18920406(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-42A1
Ensembl Y80D3A.5
Entrez Gene 180236 Entrez gene
SwissProt Q9U1R5 EMBL-EBI
WormBase CE36516 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60436 Hypothetical protein Y80D3A.5 [Caenorhabditis elegans] ref|NP_507688.2| CYtochrome P450 family member (cyp-42A1) [Caenorhabditis elegans] 0.0
blast CAE72981 Hypothetical protein CBG20323 [Caenorhabditis briggsae] 0.0
blast XP_684482 PREDICTED: similar to family 4 cytochrome P450 isoform 1 [Danio rerio] 1.0E-116
blast CAB60436 Hypothetical protein Y80D3A.5 [Caenorhabditis elegans] ref|NP_507688.2| CYtochrome P450 family member (cyp-42A1) [Caenorhabditis elegans] 1.0E-26
Protein Families
Method ID Description E-Value
p450 CP11_MOUSE Animalia; CYP1A-1; mou; CP11_MOUSE; Mus musculus; P00184 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.4E-122
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507688.2 2 4-21,77-99
Y80D3A.5 2 4-21,77-99
GENEFINDER00000017386 2 4-21,77-99
Sequence
Target Sequence 
>C. ELEGANS:172425_X_AT
gatggaggaaaagtgtattctagcaataatcctaaaaaatctgaaagtcaaggcaaagct
gaggacggatgaaatgagagttgcagctgagctcattattcgaccactttatggaaatga
gctgaaattcgagaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGGAAAAGTGTATTCTAGCA 625 405 27 Antisense
GTGTATTCTAGCAATAATCCTAAAA 508 485 39 Antisense
GAAAGTCAAGGCAAAGCTGAGGACG 194 341 69 Antisense
GGCAAAGCTGAGGACGGATGAAATG 655 533 78 Antisense
TGAAATGAGAGTTGCAGCTGAGCTC 396 571 96 Antisense
GAGTTGCAGCTGAGCTCATTATTCG 30 399 104 Antisense
AGCTGAGCTCATTATTCGACCACTT 566 79 111 Antisense
GAGCTCATTATTCGACCACTTTATG 104 389 115 Antisense
CATTATTCGACCACTTTATGGAAAT 180 215 120 Antisense
TCGACCACTTTATGGAAATGAGCTG 676 601 126 Antisense
GAAATGAGCTGAAATTCGAGAAACG 307 361 140 Antisense
Sequence Source Affymetrix Proprietary Database