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[172424_x_at]

Description T15B7.6 /REP_DB=WormBase Gene ID /WP=CE13658 /TR=O17033 /GB=AAB69962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 15.5
(0.8)
A 		2.5
(-3)
A 		9.2
(-1)
A 		22.8
(3)
A 		20
B 5.9
(-1.1)
A 		3.4
(-2)
A 		0.7
(-3)
A 		17.3
(3)
A 		17
C 1.6
(-2.9)
A 		1.2
(-3)
A 		0.8
(-3)
A 		60.9
(3)
P 		60
avr 7.7
(-2) 		2.4
(-3) 		3.6
(-2.8) 		33.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 16.1
(3)
A 		15.2
(2.7)
A 		1
(-2.8)
A 		5.7
(-1)
A 		10.7
(0.9)
A 		0.5
(-3)
A 		16
B 0.4
(-3)
A 		23.9
(3)
A 		8.9
(-0.8)
A 		7.8
(-1.1)
A 		0.9
(-2.8)
A 		0.3
(-3)
A 		24
C 0.7
(-2.9)
A 		20.8
(3)
M 		2
(-2.5)
A 		0.8
(-2.9)
A 		0.3
(-3)
A 		0.5
(-2.9)
A 		21
avr 5.7
(-1.4) 		20
(3) 		4
(-1.9) 		4.8
(-1.7) 		4
(-1.9) 		0.4
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.7
(3)
A 		0.5
(-3)
A 		2.4
(-0.8)
A 		3.3
(0.2)
A 		5
B 1.9
(-0.1)
A 		0.8
(-2)
A 		0.2
(-3)
A 		3.7
(3)
A 		4
C 0.5
(-2.9)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		10.3
(3)
P 		10
avr 2.7
(-0.6) 		0.6
(-3) 		1
(-2.5) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3
(0.3)
A 		5.4
(3)
A 		0.2
(-2.9)
A 		1.4
(-1.5)
A 		3.2
(0.5)
A 		0.1
(-3)
A 		5
B 0.1
(-3)
A 		8
(3)
A 		2.2
(-1.4)
A 		2.1
(-1.5)
A 		0.4
(-2.8)
A 		0.1
(-3)
A 		8
C 0.2
(-2.9)
A 		6.3
(3)
M 		0.5
(-2.6)
A 		0.2
(-2.9)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		6
avr 1.1
(-2.1) 		6.6
(3) 		1
(-2.2) 		1.2
(-2) 		1.2
(-2) 		0.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172424_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12224
Sequence Type Exemplar sequence
Representative Public ID T15B7.6 NCBI
Target Description T15B7.6 /REP_DB=WormBase Gene ID /WP=CE13658 /TR=O17033 /GB=AAB69962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072332 NCBI Caenorhabditis elegans T15B7.6 (T15B7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000035396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6823796:6829466:1 11/11 None
T15B7.6 ENSEMBL cdna:known chromosome:CEL140:V:6829187:6829466:1 gene:T15B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072327 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000035409 1/11 Cross Hyb Matching Probes None
T15B7.17 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6829187-6829467(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.6
Entrez Gene 188516 Entrez gene
SwissProt O17033 EMBL-EBI
WormBase CE13658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 0.0
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 0.0
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 0.0
blast AAB69962 Hypothetical protein T15B7.6 [Caenorhabditis elegans] ref|NP_504733.1| T15B7.6 [Caenorhabditis elegans] 6.0E-25
blast AAB69972 Hypothetical protein T15B7.17 [Caenorhabditis elegans] ref|NP_504728.2| T15B7.17 [Caenorhabditis elegans] 2.0E-18
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504733.1 1 51-73
T15B7.6 1 51-73
GENEFINDER00000035396 2 29-51,815-837
Sequence
Target Sequence 
>C. ELEGANS:172424_X_AT
atggttgcaatgcatccggtgaaattgagcactctaaaaacgtcttacgagaatagaaca
aggtactgtacaacgatcgttcagtcatgggctgatatcatattctctggatctcaagat
ttcaaaataaaagcggacaatgagacaaatcatacaaacggaagcataacattttttggg
tcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTGCAATGCATCCGGTGAAAT 262 51 13 Antisense
GCATCCGGTGAAATTGAGCACTCTA 95 311 24 Antisense
TGAGCACTCTAAAAACGTCTTACGA 172 567 38 Antisense
AACGTCTTACGAGAATAGAACAAGG 541 143 51 Antisense
CAAGGTACTGTACAACGATCGTTCA 253 157 71 Antisense
ACAACGATCGTTCAGTCATGGGCTG 339 113 82 Antisense
ATGGGCTGATATCATATTCTCTGGA 92 51 99 Antisense
GATATCATATTCTCTGGATCTCAAG 98 427 106 Antisense
ATTCTCTGGATCTCAAGATTTCAAA 122 11 114 Antisense
GAGACAAATCATACAAACGGAAGCA 308 367 154 Antisense
GGAAGCATAACATTTTTTGGGTCAA 97 531 172 Antisense
Sequence Source Affymetrix Proprietary Database