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[172423_x_at]

Description C07D8.2 /REP_DB=WormBase Gene ID /WP=CE06772 /TR=P91024 /GB=AAB37974.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 7
(-3)
A 		35.6
(0.8)
A 		52.5
(3)
A 		14.6
(-2)
A 		46
B 23.8
(1.1)
A 		3.9
(-3)
A 		33.3
(3)
A 		23.1
(0.9)
A 		29
C 37.5
(1.2)
A 		2.6
(-3)
A 		16.6
(-1.3)
A 		52.6
(3)
A 		50
avr 22.8
(-0.4) 		14
(-3) 		34.1
(3) 		30.1
(1.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.5
(-1.8)
A 		3.2
(-2.8)
A 		2.2
(-3)
A 		7.4
(-1.8)
A 		28
(3)
A 		13
(-0.5)
A 		26
B 30.6
(3)
A 		4
(-3)
A 		15.5
(-0.4)
A 		28
(2.4)
A 		7.2
(-2.3)
A 		21.6
(1)
A 		27
C 19.2
(0.7)
A 		21.7
(1.2)
A 		2
(-3)
A 		29.8
(2.9)
A 		2.9
(-2.8)
A 		30.2
(3)
M 		28
avr 19.1
(2) 		9.6
(-1.8) 		6.6
(-3) 		21.7
(3) 		12.7
(-0.6) 		21.6
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.6
(-2.7)
A 		7.7
(-0.1)
A 		13.7
(3)
A 		2.1
(-3)
A 		12
B 7.6
(2.9)
A 		1
(-3)
A 		7.7
(3)
A 		4.9
(0.5)
A 		7
C 12.4
(3)
A 		0.8
(-3)
A 		5.8
(-0.4)
A 		8.9
(1.2)
A 		12
avr 7.5
(1.4) 		3.2
(-3) 		9.1
(3) 		5.3
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.4
(-2.3)
A 		1.1
(-2.6)
A 		0.5
(-3)
A 		1.9
(-2)
A 		8.5
(3)
A 		3.2
(-1)
A 		8
B 10.6
(3)
A 		1.3
(-3)
A 		3.8
(-1.4)
A 		7.4
(0.9)
A 		2.9
(-2)
A 		8
(1.3)
A 		9
C 7.1
(1.1)
A 		6.6
(0.8)
A 		0.5
(-3)
A 		6
(0.4)
A 		0.9
(-2.8)
A 		10.1
(3)
M 		10
avr 6.4
(2.2) 		3
(-1.5) 		1.6
(-3) 		5.1
(0.8) 		4.1
(-0.3) 		7.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172423_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16724
Sequence Type Exemplar sequence
Representative Public ID C07D8.2 NCBI
Target Description C07D8.2 /REP_DB=WormBase Gene ID /WP=CE06772 /TR=P91024 /GB=AAB37974.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076845 NCBI Caenorhabditis elegans C07D8.2 (C07D8.2) mRNA, complete cds. 11/11 None
C07D8.2 ENSEMBL cdna:known chromosome:CEL140:X:7362267:7362845:1 gene:C07D8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078373 3/11 Cross Hyb Matching Probes A 
NM_072872 2/11 Cross Hyb Matching Probes A 
NM_072887 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000026853 4/11 Cross Hyb Matching Probes None
SNAP00000026849 4/11 Cross Hyb Matching Probes None
SNAP00000015087 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015141 1/11 Cross Hyb Matching Probes None
SNAP00000018178 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018194 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029017 8/11 Cross Hyb Matching Probes None
GENEFINDER00000022146 3/11 Cross Hyb Matching Probes None
SNAP00000022142 3/11 Cross Hyb Matching Probes None
F07B7.6 2/11 Cross Hyb Matching Probes A 
K06C4.15 1/11 Cross Hyb Matching Probes A 
K09E3.1 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C07D8.2
Entrez Gene 182363 Entrez gene
SwissProt P91024 EMBL-EBI
WormBase CE06772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37974 Hypothetical protein C07D8.2 [Caenorhabditis elegans] ref|NP_509246.1| C07D8.2 [Caenorhabditis elegans] 2.0E-77
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 2.0E-52
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 5.0E-51
Sequence
Target Sequence 
>C. ELEGANS:172423_X_AT
atggtctgggacaacgagggaatgagcctgcacgatgaattacaaatcgcgaacttgctc
gaccccgcgaacccacagagatctccaatggctcctgctgctccaacatcatctgctgct
gctccgactctaactgctgctgctccgccgtcatctgccagtgctccgatgtcatccgct
gccgcttaccatctacatggtcaacatggtcaacaactcggagctccagctcataccaat
ggtggtactactcgcctccagcagccgcttgaacataggatccagacaactacacaaggg
gtactccaagggaaacgtgagcagctcgaacagggccctacggagaccccacttctcgtc
cagcaagcccctacaactacgggcccaggtacgccaattacgccacaaagagttccgaat
gcgcgtgccttgcaaacacatcaggctataaacagccaggtgagttatccaagtgcagga
gcacagactcctggcggctatcgaagctattgccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCTGGGACAACGAGGGAATGA 533 49 13 Antisense
TACAAATCGCGAACTTGCTCGACCC 294 643 53 Antisense
CACAGAGATCTCCAATGGCTCCTGC 253 195 86 Antisense
GCCGCTTACCATCTACATGGTCAAC 336 285 193 Antisense
CATGGTCAACAACTCGGAGCTCCAG 393 209 217 Antisense
AGCTCCAGCTCATACCAATGGTGGT 109 77 234 Antisense
GCAGCCGCTTGAACATAGGATCCAG 564 313 273 Antisense
ACAAAGAGTTCCGAATGCGCGTGCC 542 111 417 Antisense
GCCAGGTGAGTTATCCAAGTGCAGG 536 279 467 Antisense
AAGTGCAGGAGCACAGACTCCTGGC 248 159 483 Antisense
GGCGGCTATCGAAGCTATTGCCACA 322 541 505 Antisense
Sequence Source Affymetrix Proprietary Database