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[172422_x_at]

Description K10D6.2B /REP_DB=WormBase Gene ID /WP=CE16237 /TR=O45669 /GB=CAA98513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 22      6grp_total > 22      4grp_total > 52      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1761
1 2 3 4 range
A 2374.9
(3)
P 		2351.5
(2.9)
P 		1914.5
(1.4)
P 		670.5
(-3)
P 		1704
B 2415.3
(3)
P 		1939.2
(1.4)
P 		1550.2
(0.1)
P 		654.4
(-3)
P 		1761
C 2336.7
(3)
P 		2177.9
(2.4)
P 		1772.7
(1)
P 		658.1
(-3)
P 		1679
avr 2375.6
(3) 		2156.2
(2.2) 		1745.8
(0.8) 		661
(-3) 		1715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1878
1 2 3 4 5 6 range
A 2397.7
(3)
P 		2078.5
(1.9)
P 		2229.3
(2.4)
P 		2266.7
(2.5)
P 		1007.2
(-1.8)
P 		654.9
(-3)
P 		1743
B 1879.7
(2.9)
P 		1846.1
(2.7)
P 		1388.5
(0.5)
P 		1908.7
(3)
P 		1151.9
(-0.6)
P 		641.5
(-3)
P 		1267
C 2227.7
(3)
P 		2154.7
(2.7)
P 		2048.4
(2.4)
P 		2172.5
(2.8)
P 		1055.2
(-1.1)
P 		519.9
(-3)
P 		1708
avr 2168.4
(3) 		2026.4
(2.5) 		1888.7
(1.9) 		2116
(2.8) 		1071.4
(-1.2) 		605.4
(-3) 		1563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 767
1 2 3 4 range
A 864.7
(3)
P 		510.4
(0.2)
P 		500.5
(0.1)
P 		98.2
(-3)
P 		767
B 770.2
(3)
P 		478.9
(0.2)
P 		359.2
(-0.9)
P 		139.5
(-3)
P 		631
C 773.5
(3)
P 		626.2
(1.7)
P 		617.8
(1.6)
P 		111
(-3)
P 		663
avr 802.8
(3) 		538.5
(0.7) 		492.5
(0.3) 		116.2
(-3) 		687

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 442
(-0.1)
P 		739.2
(3)
P 		485.5
(0.4)
P 		574.9
(1.3)
P 		303.9
(-1.5)
P 		159.5
(-3)
P 		580
B 654.1
(3)
P 		614.5
(2.4)
P 		337.2
(-1.6)
P 		505.5
(0.9)
P 		468
(0.3)
P 		239.2
(-3)
P 		415
C 825.7
(3)
P 		657.5
(1.5)
P 		521.3
(0.2)
P 		436.9
(-0.6)
P 		341.5
(-1.5)
P 		174
(-3)
P 		652
avr 640.6
(2.6) 		670.4
(3) 		448
(0.2) 		505.8
(0.9) 		371.1
(-0.7) 		190.9
(-3) 		480
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172422_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14195
Sequence Type Exemplar sequence
Representative Public ID K10D6.2B NCBI
Target Description K10D6.2B /REP_DB=WormBase Gene ID /WP=CE16237 /TR=O45669 /GB=CAA98513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073441(11), NM_073442(11), NM_073443(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073441 NCBI Caenorhabditis elegans K10D6.2b (K10D6.2) mRNA, complete cds. 11/11 None
NM_073442 NCBI Caenorhabditis elegans K10D6.2a (K10D6.2) mRNA, complete cds. 11/11 A 
NM_073443 NCBI Caenorhabditis elegans K10D6.2c (K10D6.2) mRNA, complete cds. 9/11 A 
SNAP00000039397 ENSEMBL cdna:SNAP chromosome:CEL140:V:11197158:11198587:-1 10/11 None
GENEFINDER00000039403 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11196509:11198587:-1 11/11 None
K10D6.2b ENSEMBL cdna:known chromosome:CEL140:V:11196383:11198587:-1 gene:K10D6.2 11/11 A 
K10D6.2a ENSEMBL cdna:known chromosome:CEL140:V:11196390:11198587:-1 gene:K10D6.2 11/11 A 
K10D6.2c ENSEMBL cdna:known chromosome:CEL140:V:11196391:11198592:-1 gene:K10D6.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11196508-11198587(-) 100.0 100.0
Public Domain and Genome References
Ensembl K10D6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98514 Hypothetical protein K10D6.2a [Caenorhabditis elegans] ref|NP_505843.1| K10D6.2a [Caenorhabditis elegans] 0.0
blast CAA98513 Hypothetical protein K10D6.2b [Caenorhabditis elegans] ref|NP_505842.1| K10D6.2b [Caenorhabditis elegans] 1.0E-162
blast CAE75189 Hypothetical protein CBG23133 [Caenorhabditis briggsae] 1.0E-152
blast A89208 protein K10D6.2b [imported] - Caenorhabditis elegans 1.0E-147
blast CAA98513 Hypothetical protein K10D6.2b [Caenorhabditis elegans] ref|NP_505842.1| K10D6.2b [Caenorhabditis elegans] 1.0E-145
blast A89208 protein K10D6.2b [imported] - Caenorhabditis elegans 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505842.1 4 15-37,114-136,146-168,189-211
NP_505843.1 5 15-37,114-136,146-168,189-211,235-257
NP_505844.2 4 15-37,114-136,146-168,189-211
K10D6.2b 4 15-37,114-136,146-168,189-211
K10D6.2a 5 15-37,114-136,146-168,189-211,235-257
K10D6.2c 4 15-37,114-136,146-168,189-211
SNAP00000039397 4 15-37,114-136,146-168,189-211
GENEFINDER00000039403 5 15-37,114-136,146-168,189-211,245-267
Sequence
Target Sequence 
>C. ELEGANS:172422_X_AT
gccgaactcgtcatccaaaatactctcaacaacattgacgaagatggagctgctggagaa
tcagaacatcacaggttctgggcttggcacaaagctattctcttcttcattattacttcc
gaattccttgcattcatctcaatttgctctggagtatgtgctccatgtgttccatctaca
gctttcgctttttcaatttcacttttcattgcgatgctctgctcattattagctgacggt
atctttttcctcgccgccaacagagttgacaacagatttgtccaaggaatggtcggaaca
tatgaacaaagaattggatatgctttctatcttcatttgatgggaactctttgctggatt
ggagcattcgtatgcactcttcttacaacatacaagtttgttacaggagacgaggaagat
ggaagcaaggagaacctattcacatggcagcagcagacgcaaccagttactctcagcgta
aatgagcttccatacagaagagaggagccattgctccacgacaaatttgtatcatcacaa
caagccggctatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGAACTCGTCATCCAAAATACTC 87 285 259 Antisense
CACAGGTTCTGGGCTTGGCACAAAG 4 195 328 Antisense
GGCACAAAGCTATTCTCTTCTTCAT 548 535 344 Antisense
TACTTCCGAATTCCTTGCATTCATC 173 645 372 Antisense
AGCTTTCGCTTTTTCAATTTCACTT 516 79 438 Antisense
TTCATTGCGATGCTCTGCTCATTAT 469 689 463 Antisense
TTAGCTGACGGTATCTTTTTCCTCG 632 659 487 Antisense
AGCATTCGTATGCACTCTTCTTACA 143 79 621 Antisense
GAGAACCTATTCACATGGCAGCAGC 107 393 688 Antisense
CAGACGCAACCAGTTACTCTCAGCG 337 205 712 Antisense
TATCATCACAACAAGCCGGCTATCG 24 661 788 Antisense
Sequence Source Affymetrix Proprietary Database