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[172421_x_at]

Description B0554.1 /REP_DB=WormBase Gene ID /WP=CE07773 /TR=P91008 /GB=AAB37617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 18      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.6
(3)
A 		2.2
(0.3)
A 		1.7
(-3)
A 		1.7
(-3)
A 		1
B 0.9
(-3)
A 		1.4
(-2.2)
A 		4.8
(3)
A 		1.1
(-2.7)
A 		4
C 3.5
(-1.4)
A 		5.5
(0)
A 		1.3
(-3)
A 		9.7
(3)
A 		8
avr 2.3
(-3) 		3
(-0.8) 		2.6
(-2.1) 		4.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 785
1 2 3 4 5 6 range
A 5
(-3)
A 		2.6
(-3)
A 		50.5
(-2.5)
A 		623.8
(3)
P 		510.9
(1.9)
P 		44.5
(-2.6)
A 		621
B 1.7
(-3)
A 		3.9
(-3)
A 		64.8
(-2.5)
A 		781.2
(3)
P 		761.2
(2.8)
P 		87.6
(-2.3)
A 		780
C 1.5
(-3)
A 		3.4
(-3)
A 		4.4
(-3)
A 		786.2
(3)
P 		745.1
(2.7)
P 		52.3
(-2.6)
P 		785
avr 2.7
(-3) 		3.3
(-3) 		39.9
(-2.7) 		730.4
(3) 		672.4
(2.5) 		61.5
(-2.5) 		728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.9
(3)
A 		0.5
(-1)
A 		0.4
(-2)
A 		0.3
(-3)
A 		1
B 0.3
(-2.3)
A 		0.3
(-2.3)
A 		1.1
(3)
A 		0.2
(-3)
A 		1
C 1.2
(1)
A 		1.6
(3)
A 		0.4
(-3)
A 		1.6
(3)
A 		1
avr 0.8
(3) 		0.8
(3) 		0.6
(-3) 		0.7
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 0.9
(-3)
A 		0.9
(-3)
A 		11
(-2.6)
A 		158.2
(3)
P 		154.2
(2.8)
P 		10.8
(-2.6)
A 		157
B 0.6
(-3)
A 		1.3
(-3)
A 		15.7
(-2.7)
A 		206.9
(1)
P 		309.2
(3)
P 		32.7
(-2.4)
A 		309
C 0.6
(-3)
A 		1
(-3)
A 		1.1
(-3)
A 		158.1
(0.9)
P 		241.1
(3)
P 		17.5
(-2.6)
P 		241
avr 0.7
(-3) 		1.1
(-3) 		9.3
(-2.8) 		174.4
(1.5) 		234.8
(3) 		20.3
(-2.5) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172421_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15299
Sequence Type Exemplar sequence
Representative Public ID B0554.1 NCBI
Target Description B0554.1 /REP_DB=WormBase Gene ID /WP=CE07773 /TR=P91008 /GB=AAB37617.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070801 NCBI Caenorhabditis elegans B0554.1 (B0554.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:438230:438479:1 11/11 None
B0554.1 ENSEMBL cdna:known chromosome:CEL140:V:438230:438585:1 gene:B0554.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:438229-438479(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.1
Entrez Gene 178567 Entrez gene
SwissProt P91008 EMBL-EBI
WormBase CE07773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37617 Hypothetical protein B0554.1 [Caenorhabditis elegans] ref|NP_503202.1| B0554.1 [Caenorhabditis elegans] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503202.1 1 7-26
B0554.1 1 7-26
GENEFINDER00000032193 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:172421_X_AT
ctcctccaaattttcgcgattatttttctgattgcagtcatttcagctgagccaatagtt
cgtgaaaaacgtgggctccgggaagacattcgaaaaatcaaggactcggctctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCCAAATTTTCGCGATTATTT 384 235 31 Antisense
TTTCGCGATTATTTTTCTGATTGCA 325 671 42 Antisense
CGCGATTATTTTTCTGATTGCAGTC 710 253 45 Antisense
TTTCTGATTGCAGTCATTTCAGCTG 457 669 55 Antisense
GTCATTTCAGCTGAGCCAATAGTTC 231 467 67 Antisense
CAGCTGAGCCAATAGTTCGTGAAAA 513 201 74 Antisense
TAGTTCGTGAAAAACGTGGGCTCCG 4 653 86 Antisense
AACGTGGGCTCCGGGAAGACATTCG 615 143 98 Antisense
TGGGCTCCGGGAAGACATTCGAAAA 264 553 102 Antisense
GAAAAATCAAGGACTCGGCTCTGCC 553 355 122 Antisense
AAAAATCAAGGACTCGGCTCTGCCA 216 129 123 Antisense
Sequence Source Affymetrix Proprietary Database