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[172420_x_at]

Description C24A3.8 /REP_DB=WormBase Gene ID /WP=CE04065 /TR=Q18127 /GB=AAA81462.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 3.6
(-3)
A 		6
(-1.8)
A 		5.4
(-2.1)
A 		15.9
(3)
A 		12
B 3.1
(-3)
A 		10.9
(-0.6)
A 		4.5
(-2.6)
A 		22.6
(3)
A 		20
C 4.6
(-3)
A 		5.4
(-2.9)
A 		21.7
(-1.2)
A 		60.9
(3)
A 		56
avr 3.8
(-3) 		7.4
(-2.3) 		10.5
(-1.6) 		33.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 30.1
(2.7)
A 		5.3
(-2.3)
A 		15.6
(-0.3)
A 		1.9
(-3)
A 		31.8
(3)
A 		10.2
(-1.3)
A 		30
B 4.2
(-3)
A 		20.8
(3)
A 		14.4
(0.7)
A 		6.6
(-2.1)
A 		14.1
(0.6)
A 		11.1
(-0.5)
A 		17
C 2.7
(-3)
A 		30
(1.3)
A 		41.1
(3)
A 		5.5
(-2.5)
A 		2.5
(-3)
A 		4.4
(-2.7)
A 		39
avr 12.3
(-0.6) 		18.7
(1.4) 		23.7
(3) 		4.7
(-3) 		16.1
(0.6) 		8.6
(-1.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.3
(-3)
A 		1.3
(-3)
A 		1.4
(-2.4)
A 		2.3
(3)
A 		1
B 1
(-3)
A 		2.7
(-0.3)
A 		1
(-3)
A 		4.8
(3)
A 		4
C 1.5
(-3)
A 		1.6
(-2.9)
A 		7.6
(1.2)
A 		10.3
(3)
A 		9
avr 1.3
(-3) 		1.9
(-2.2) 		3.3
(-0.3) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.5
(0.3)
A 		1.9
(-2.1)
A 		3.4
(-1.1)
A 		0.5
(-3)
A 		9.6
(3)
A 		2.5
(-1.7)
A 		9
B 1.5
(-3)
A 		6.9
(3)
A 		3.5
(-0.8)
A 		1.8
(-2.7)
A 		5.7
(1.7)
A 		4.2
(-0)
A 		5
C 1
(-2.9)
A 		9.2
(2.2)
A 		10.5
(3)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		1.5
(-2.6)
A 		10
avr 2.7
(-1) 		6
(3) 		5.8
(2.8) 		1.1
(-3) 		5.4
(2.3) 		2.7
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172420_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16655
Sequence Type Exemplar sequence
Representative Public ID C24A3.8 NCBI
Target Description C24A3.8 /REP_DB=WormBase Gene ID /WP=CE04065 /TR=Q18127 /GB=AAA81462.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077121 NCBI Caenorhabditis elegans C24A3.8 (C24A3.8) mRNA, complete cds. 11/11 None
C24A3.8 ENSEMBL cdna:known chromosome:CEL140:X:9006519:9006716:-1 gene:C24A3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075929 4/11 Cross Hyb Matching Probes A 
NM_060925 4/11 Cross Hyb Matching Probes A 
SNAP00000021822 4/11 Cross Hyb Matching Probes None
SNAP00000015866 7/11 Cross Hyb Matching Probes None
F44F1.2 4/11 Cross Hyb Matching Probes A 
F31A9.1 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C24A3.8
Entrez Gene 182828 Entrez gene
SwissProt Q18127 EMBL-EBI
WormBase CE04065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81462 Hypothetical protein C24A3.8 [Caenorhabditis elegans] ref|NP_509522.1| C24A3.8 [Caenorhabditis elegans] 4.0E-24
blast AAB00606 Hypothetical protein F31A9.1 [Caenorhabditis elegans] ref|NP_508330.1| F31A9.1 [Caenorhabditis elegans] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:172420_X_AT
gaaagacggcgtcagaaaccccgattcaaactaccaccaaaaggacgattcaaggcgcat
gaggtctcgccacgacacatacaacaacgactgcgaccgtactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGACGGCGTCAGAAACCCCGAT 264 303 18 Antisense
TCAGAAACCCCGATTCAAACTACCA 417 569 29 Antisense
TTCAAACTACCACCAAAAGGACGAT 101 685 42 Antisense
ACTACCACCAAAAGGACGATTCAAG 324 95 47 Antisense
CCAAAAGGACGATTCAAGGCGCATG 554 275 54 Antisense
GACGATTCAAGGCGCATGAGGTCTC 221 379 61 Antisense
TTCAAGGCGCATGAGGTCTCGCCAC 160 683 66 Antisense
TCTCGCCACGACACATACAACAACG 222 611 82 Antisense
GCCACGACACATACAACAACGACTG 501 279 86 Antisense
GACACATACAACAACGACTGCGACC 356 367 91 Antisense
TACAACAACGACTGCGACCGTACTC 483 641 97 Antisense
Sequence Source Affymetrix Proprietary Database