[Home] | [Total List]

[172419_x_at]

Description K03F8.1 /REP_DB=WormBase Gene ID /WP=CE01356 /TR=Q21195 /GB=AAA50713.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 32.4
(-1.6)
A 		32.8
(-1.6)
A 		15.2
(-3)
A 		89.2
(3)
A 		74
B 6.8
(-2.9)
A 		66.8
(3)
A 		6.1
(-3)
A 		43.4
(0.7)
A 		61
C 29.9
(-2.6)
A 		87.8
(0.2)
A 		21.5
(-3)
A 		146.1
(3)
M 		125
avr 23
(-2.3) 		62.5
(0.7) 		14.3
(-3) 		92.9
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 9.9
(-2.6)
A 		11.7
(-2.4)
A 		41.4
(1.2)
A 		6.5
(-3)
A 		56.1
(3)
A 		20
(-1.4)
A 		50
B 19.8
(0.4)
A 		15.3
(-0.6)
A 		7
(-2.6)
A 		30.9
(3)
A 		23.8
(1.3)
A 		5.1
(-3)
A 		26
C 7.5
(-2.7)
A 		82.8
(3)
A 		9.8
(-2.5)
A 		9.1
(-2.6)
A 		3.8
(-3)
A 		29.6
(-1)
A 		79
avr 12.4
(-3) 		36.6
(3) 		19.4
(-1.3) 		15.5
(-2.2) 		27.9
(0.8) 		18.2
(-1.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 11.8
(2.1)
A 		7.1
(-1)
A 		4
(-3)
A 		13.1
(3)
A 		9
B 2.2
(-2.7)
A 		16.5
(3)
A 		1.4
(-3)
A 		9.2
(0.1)
A 		15
C 9.9
(-2.2)
A 		25.2
(3)
A 		7.5
(-3)
A 		24.6
(2.8)
M 		18
avr 8
(-1.2) 		16.3
(3) 		4.3
(-3) 		15.6
(2.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.8
(-3)
A 		4.2
(-2)
A 		9
(-0.1)
A 		1.7
(-3)
A 		16.9
(3)
A 		4.9
(-1.7)
A 		15
B 6.9
(0.9)
A 		5.1
(-0.5)
A 		1.7
(-3)
A 		8.2
(1.9)
A 		9.7
(3)
A 		1.9
(-2.9)
A 		8
C 2.8
(-2.6)
A 		25.3
(3)
A 		2.5
(-2.7)
A 		1.8
(-2.9)
A 		1.2
(-3)
A 		9.9
(-0.8)
A 		24
avr 3.8
(-3) 		11.5
(3) 		4.4
(-2.5) 		3.9
(-2.9) 		9.3
(1.3) 		5.6
(-1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172419_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7593
Sequence Type Exemplar sequence
Representative Public ID K03F8.1 NCBI
Target Description K03F8.1 /REP_DB=WormBase Gene ID /WP=CE01356 /TR=Q21195 /GB=AAA50713.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066037 NCBI Caenorhabditis elegans K03F8.1 (K03F8.1) mRNA, complete cds. 11/11 None
K03F8.1 ENSEMBL cdna:known chromosome:CEL140:III:6511204:6511716:1 gene:K03F8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075845 6/11 Cross Hyb Matching Probes A 
Y45F3A.7 7/11 Cross Hyb Matching Probes A 
T02E9.4 5/11 Cross Hyb Matching Probes None
F21E9.1 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl K03F8.1
Entrez Gene 186955 Entrez gene
SwissProt Q21195 EMBL-EBI
WormBase CE01356 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50713 Hypothetical protein K03F8.1 [Caenorhabditis elegans] ref|NP_498438.1| K03F8.1 [Caenorhabditis elegans] 2.0E-95
blast T23706 hypothetical protein M04C7.2 - Caenorhabditis elegans 3.0E-93
blast AAC70878 Hypothetical protein F21E9.1 [Caenorhabditis elegans] ref|NP_508246.1| F21E9.1 [Caenorhabditis elegans] 2.0E-92
Sequence
Target Sequence 
>C. ELEGANS:172419_X_AT
acaaattctcaaagcattctcctccaattccccaaagttctacgcccacctttataatac
ctatgttgctcccattatgaattattgctcggaagtctatgctccctacccaaactcatt
gctttcagcaaaacttgaacaacctctaaggcactttaccaagcgcgttcttcaaagatg
caatacaaaattctcatcttatgaaaatcgactcagtataatggagctccactccaccag
acacaatagaattaaggctcaattgaaactactgtatagactgttaacaggtacctctca
tttttctaaccttagacaatttgttactttctctagttctaataggcacccaatgatttt
agttaggaaggacaaatgctccacgcatttctttgctcttatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAATTCTCAAAGCATTCTCCTCC 659 111 27 Antisense
GCCCACCTTTATAATACCTATGTTG 431 285 70 Antisense
TTATAATACCTATGTTGCTCCCATT 96 681 78 Antisense
TATTGCTCGGAAGTCTATGCTCCCT 452 665 109 Antisense
CCTACCCAAACTCATTGCTTTCAGC 683 265 131 Antisense
ACCTCTAAGGCACTTTACCAAGCGC 606 87 168 Antisense
TACCAAGCGCGTTCTTCAAAGATGC 92 651 183 Antisense
GTATAATGGAGCTCCACTCCACCAG 683 453 242 Antisense
TAACAGGTACCTCTCATTTTTCTAA 523 639 311 Antisense
GACAATTTGTTACTTTCTCTAGTTC 367 353 341 Antisense
CACGCATTTCTTTGCTCTTATCATC 702 199 408 Antisense
Sequence Source Affymetrix Proprietary Database