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[172418_x_at]

Description F47B3.5 /REP_DB=WormBase Gene ID /WP=CE10624 /TR=O01554 /GB=AAB52360.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.4
(-2.9)
A 		2
(-2.7)
A 		0.9
(-3)
A 		25.1
(3)
A 		24
B 3.3
(3)
A 		2.5
(-0.7)
A 		2.2
(-2.1)
A 		2
(-3)
A 		1
C 0.9
(-3)
A 		1.1
(-3)
A 		3.9
(-2.3)
A 		28.5
(3)
A 		28
avr 1.9
(-3) 		1.9
(-3) 		2.3
(-2.9) 		18.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 2.6
(-3)
A 		1.9
(-3)
A 		24.2
(-2.5)
A 		3.4
(-3)
A 		119.1
(-0.4)
A 		267.4
(3)
P 		266
B 2.9
(-3)
A 		2.5
(-3)
A 		1.2
(-3)
A 		19.4
(-2.5)
A 		99.1
(-0.4)
P 		231.3
(3)
P 		230
C 1.1
(-3)
A 		1.9
(-3)
A 		1.6
(-3)
A 		58.4
(-1.3)
A 		65
(-1.1)
P 		205.2
(3)
P 		204
avr 2.2
(-3) 		2.1
(-3) 		9
(-2.8) 		27.1
(-2.4) 		94.4
(-0.6) 		234.6
(3) 		233
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(-2.5)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		3.7
(3)
A 		4
B 1
(3)
A 		0.6
(-1)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
C 0.3
(-3)
A 		0.3
(-3)
A 		1.4
(-1.5)
A 		4.8
(3)
A 		5
avr 0.6
(-2.5) 		0.4
(-3) 		0.7
(-2.3) 		3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-3)
A 		5.3
(-2.6)
A 		0.9
(-3)
A 		35.9
(0.3)
A 		65.1
(3)
P 		65
B 1
(-3)
A 		0.8
(-3)
A 		0.3
(-3)
A 		5.1
(-2.7)
A 		40.3
(-0.2)
P 		86.2
(3)
P 		86
C 0.4
(-3)
A 		0.6
(-3)
A 		0.4
(-3)
A 		11.7
(-2)
A 		21
(-1.2)
P 		68.7
(3)
P 		68
avr 0.6
(-3) 		0.7
(-3) 		2
(-2.9) 		5.9
(-2.6) 		32.4
(-0.4) 		73.3
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172418_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.104
Sequence Type Exemplar sequence
Representative Public ID F47B3.5 NCBI
Target Description F47B3.5 /REP_DB=WormBase Gene ID /WP=CE10624 /TR=O01554 /GB=AAB52360.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058871(11), NM_058872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058871 NCBI Caenorhabditis elegans F47B3.4 (F47B3.4) mRNA, complete cds. 11/11 None
NM_058872 NCBI Caenorhabditis elegans F47B3.5 (F47B3.5) mRNA, complete cds. 11/11 None
SNAP00000030464 ENSEMBL cdna:SNAP chromosome:CEL140:I:3961039:3962201:1 11/11 None
GENEFINDER00000030471 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3961039:3962508:1 11/11 None
SNAP00000030465 ENSEMBL cdna:SNAP chromosome:CEL140:I:3963117:3965595:-1 11/11 None
GENEFINDER00000030473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3963117:3969943:-1 11/11 None
F47B3.4 ENSEMBL cdna:known chromosome:CEL140:I:3961039:3962201:1 gene:F47B3.4 11/11 None
F47B3.5 ENSEMBL cdna:known chromosome:CEL140:I:3963117:3964179:-1 gene:F47B3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074111 2/11 Cross Hyb Matching Probes A 
SNAP00000015357 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015362 2/11 Cross Hyb Matching Probes None
ZC376.8 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3961385-3962201(+) 67.5 98.5
chrI:3963116-3964179(-) 69.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F47B3.4
F47B3.5
Entrez Gene 185887 Entrez gene
185888 Entrez gene
SwissProt O01553 EMBL-EBI
O01554 EMBL-EBI
WormBase CE10622 Wormbase
CE10624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52362 Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] 0.0
blast AAB52356 Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] 0.0
blast AAB52361 Hypothetical protein F47B3.6 [Caenorhabditis elegans] ref|NP_491275.2| F47B3.6 [Caenorhabditis elegans] 1.0E-175
blast AAB52360 Hypothetical protein F47B3.5 [Caenorhabditis elegans] ref|NP_491273.1| F47B3.5 [Caenorhabditis elegans] 2.0E-45
blast AAB52359 Hypothetical protein F47B3.4 [Caenorhabditis elegans] ref|NP_491272.1| F47B3.4 [Caenorhabditis elegans] 2.0E-45
blast AAB52360 Hypothetical protein F47B3.5 [Caenorhabditis elegans] ref|NP_491273.1| F47B3.5 [Caenorhabditis elegans] 3.0E-45
blast AAB52359 Hypothetical protein F47B3.4 [Caenorhabditis elegans] ref|NP_491272.1| F47B3.4 [Caenorhabditis elegans] 3.0E-45
blast AAB52360 Hypothetical protein F47B3.5 [Caenorhabditis elegans] ref|NP_491273.1| F47B3.5 [Caenorhabditis elegans] 5.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-102
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.2E-92
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491272.1 1 15-34
F47B3.4 1 15-34
SNAP00000030464 1 15-34
GENEFINDER00000030471 1 15-34
SNAP00000030465 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:172418_X_AT
cgacgagcccgcgaaatccaaaaagagtgaaaagaaggagaagtccaagaatgagggaag
caagaaggaggagagtaaggataaagaaaagtcaaaaaagtcggaggataaaaagtcgga
agatccgaagaaggaagacgctaagaagccagatgtcaaaggaaaggatactttcaaaaa
gccagtcgatgaatctgcggttgctcctaaaaaggatcctaattatcagactctggtcgg
attgaacaatgatctcttcggaccggacaaaaacccgaaaaagcagttcaaagcccccac
aaaagttgaaaaagctgatgtgaaagatcctcaatatgagacattgaatggattgggtga
agaaatgttcaaggatgagaagaaagatgatgaaggaaaaaagaaggagttcaagcaacc
ggataaagtgcagaaagctgatgcaaaggatccacagtatgagactttgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGAGCCCGCGAAATCCAAAAAG 203 251 27 Antisense
GGAAGACGCTAAGAAGCCAGATGTC 297 531 159 Antisense
AAAGCCAGTCGATGAATCTGCGGTT 668 123 204 Antisense
GAATCTGCGGTTGCTCCTAAAAAGG 672 323 217 Antisense
GGATCCTAATTATCAGACTCTGGTC 203 509 240 Antisense
CAGACTCTGGTCGGATTGAACAATG 659 205 253 Antisense
ACAATGATCTCTTCGGACCGGACAA 658 113 272 Antisense
AAAGCTGATGTGAAAGATCCTCAAT 181 123 337 Antisense
GAAGGAGTTCAAGCAACCGGATAAA 422 333 429 Antisense
AAAGCTGATGCAAAGGATCCACAGT 183 123 460 Antisense
GGATCCACAGTATGAGACTTTGAAT 461 513 474 Antisense
Sequence Source Affymetrix Proprietary Database