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[172416_x_at]

Description B0391.10 /REP_DB=WormBase Gene ID /WP=CE17338 /TR=O62015 /GB=CAB03802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 16.6
(0.3)
A 		26.9
(3)
A 		4.3
(-3)
A 		25.8
(2.7)
A 		23
B 22.7
(-3)
A 		26.3
(-1.2)
A 		34.6
(3)
P 		27.2
(-0.7)
A 		12
C 3.8
(-3)
A 		26.3
(0.5)
A 		23.1
(0)
A 		42
(3)
P 		38
avr 14.4
(-3) 		26.5
(1.2) 		20.7
(-0.8) 		31.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 2.2
(-3)
A 		18.7
(-1.4)
A 		38.8
(0.6)
A 		19.8
(-1.3)
A 		25.8
(-0.7)
A 		62.6
(3)
P 		60
B 14.9
(-0.4)
A 		3.6
(-3)
A 		29
(2.9)
A 		19.3
(0.6)
A 		10.2
(-1.5)
A 		29.5
(3)
P 		26
C 2
(-3)
A 		31.7
(0.3)
A 		22.9
(-0.7)
A 		56.4
(3)
A 		7.3
(-2.4)
A 		25.8
(-0.4)
P 		54
avr 6.4
(-3) 		18
(-0.9) 		30.2
(1.3) 		31.8
(1.6) 		14.4
(-1.5) 		39.3
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.1
(3)
A 		5.8
(2.6)
A 		1.1
(-3)
A 		3.8
(0.2)
A 		5
B 7.2
(0.8)
A 		6.5
(-1.1)
A 		8
(3)
P 		5.8
(-3)
A 		2
C 1.2
(-3)
A 		7.6
(2.6)
A 		8
(3)
A 		7.1
(2.2)
P 		7
avr 4.8
(-3) 		6.6
(3) 		5.7
(0) 		5.6
(-0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.6
(-0.5)
A 		8.4
(0.2)
A 		5
(-1.1)
A 		7.8
(0)
A 		15.2
(3)
P 		15
B 5.2
(-0.6)
A 		1.2
(-3)
A 		7
(0.6)
A 		5.1
(-0.6)
A 		4.1
(-1.2)
A 		11
(3)
P 		10
C 0.7
(-3)
A 		9.7
(2.1)
A 		5.8
(-0.1)
A 		11.3
(3)
A 		2.4
(-2)
A 		8.6
(1.5)
P 		11
avr 2.1
(-3) 		5.8
(-0.7) 		7.1
(0.2) 		7.1
(0.2) 		4.8
(-1.3) 		11.6
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172416_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14671
Sequence Type Exemplar sequence
Representative Public ID B0391.10 NCBI
Target Description B0391.10 /REP_DB=WormBase Gene ID /WP=CE17338 /TR=O62015 /GB=CAB03802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074474 NCBI Caenorhabditis elegans B0391.10 (B0391.10) mRNA, complete cds. 11/11 None
B0391.10 ENSEMBL cdna:known chromosome:CEL140:V:15594344:15594673:1 gene:B0391.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015395 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022358 2/11 Cross Hyb Matching Probes None
SNAP00000022310 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15594343-15594673(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0391.10
Entrez Gene 181955 Entrez gene
SwissProt O62015 EMBL-EBI
WormBase CE17338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03802 Hypothetical protein B0391.10 [Caenorhabditis elegans] ref|NP_506875.1| B0391.10 [Caenorhabditis elegans] 4.0E-49
Sequence
Target Sequence 
>C. ELEGANS:172416_X_AT
atgacgatgcaacttatagggaaaaaaagttttccccgaaaagcgaaccggggagccaaa
acgagaaacccatcaatctactggaactatcgtcaattcatatgctccagctcaagcgga
tacccgattccaatgaatttctccgatgaatttgactttgacgaagatcgtgtctatgaa
atgctttgctcagatgatgagaatacgactgattattctgacgagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGATGCAACTTATAGGGAAAA 276 45 13 Antisense
GGAGCCAAAACGAGAAACCCATCAA 296 519 64 Antisense
AACCCATCAATCTACTGGAACTATC 157 147 79 Antisense
GAACTATCGTCAATTCATATGCTCC 103 351 96 Antisense
ATTCATATGCTCCAGCTCAAGCGGA 672 9 108 Antisense
GCTCAAGCGGATACCCGATTCCAAT 31 303 122 Antisense
GGATACCCGATTCCAATGAATTTCT 195 511 130 Antisense
GAATTTCTCCGATGAATTTGACTTT 599 325 147 Antisense
TCCGATGAATTTGACTTTGACGAAG 295 595 154 Antisense
GATCGTGTCTATGAAATGCTTTGCT 561 417 178 Antisense
ATACGACTGATTATTCTGACGAGAT 657 23 215 Antisense
Sequence Source Affymetrix Proprietary Database