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[172414_x_at]

Description K12B6.7 /REP_DB=WormBase Gene ID /WP=CE12176 /TR=O16385 /GB=AAB65920.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 4.9
(-2.9)
A 		4.4
(-2.9)
A 		2
(-3)
A 		288.4
(3)
P 		286
B 7.4
(-2.6)
A 		2
(-3)
A 		3.7
(-2.9)
A 		92.7
(3)
A 		91
C 31
(-2.6)
A 		4.6
(-3)
A 		2.9
(-3)
A 		453.9
(3)
M 		451
avr 14.4
(-2.7) 		3.7
(-3) 		2.9
(-3) 		278.3
(3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 6.6
(-2.6)
A 		3
(-3)
A 		52.8
(3)
A 		5.1
(-2.7)
A 		5.4
(-2.7)
A 		3.2
(-3)
A 		50
B 5.7
(-2.3)
A 		10.8
(-1.4)
A 		4.5
(-2.5)
A 		34.1
(3)
A 		9.7
(-1.6)
A 		2
(-3)
A 		32
C 1.8
(-3)
A 		60.3
(3)
A 		9.4
(-2.2)
A 		45.5
(1.5)
A 		1.9
(-3)
A 		5.2
(-2.7)
A 		59
avr 4.7
(-2.7) 		24.7
(2.1) 		22.2
(1.5) 		28.2
(3) 		5.7
(-2.5) 		3.5
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 1.8
(-2.8)
A 		1
(-2.9)
A 		0.5
(-3)
A 		42.2
(3)
P 		42
B 2.4
(-2.4)
A 		0.5
(-3)
A 		0.9
(-2.9)
A 		19.8
(3)
A 		19
C 10.3
(-2.3)
A 		1.3
(-3)
A 		1
(-3)
A 		76.5
(3)
M 		76
avr 4.8
(-2.5) 		0.9
(-3) 		0.8
(-3) 		46.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		1
(-2.9)
A 		11.5
(3)
A 		1.3
(-2.7)
A 		1.6
(-2.6)
A 		0.8
(-3)
A 		11
B 2
(-2.1)
A 		3.6
(-0.9)
A 		1.1
(-2.7)
A 		9
(3)
A 		3.9
(-0.7)
A 		0.7
(-3)
A 		8
C 0.7
(-3)
A 		18.4
(3)
A 		2.4
(-2.4)
A 		9.2
(-0.1)
A 		0.6
(-3)
A 		1.7
(-2.6)
A 		18
avr 1.3
(-2.8) 		7.7
(3) 		5
(0.5) 		6.5
(1.9) 		2
(-2.2) 		1.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172414_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11767
Sequence Type Exemplar sequence
Representative Public ID K12B6.7 NCBI
Target Description K12B6.7 /REP_DB=WormBase Gene ID /WP=CE12176 /TR=O16385 /GB=AAB65920.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072208 NCBI Caenorhabditis elegans K12B6.7 (K12B6.7) mRNA, complete cds. 11/11 None
K12B6.7 ENSEMBL cdna:known chromosome:CEL140:V:6298694:6302047:-1 gene:K12B6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014744 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028339 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032958 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043323 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl K12B6.7
Entrez Gene 187319 Entrez gene
SwissProt O16385 EMBL-EBI
WormBase CE12176 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65920 Hypothetical protein K12B6.7 [Caenorhabditis elegans] ref|NP_504609.1| K12B6.7 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:172414_X_AT
ggcgggaaattcaaatttgcagtgtaaaaaattttggcgggaaattcaaattttcagtga
aaaaaatgttggcgggaaattaaaattttcagtgaaaaaaattttagcgggaaattcaaa
tttgcagtgtaaaaaattttggcgggaaattcaaattttctctgaaaaaaattttggcgg
gaaattcaaattttcagtgaaaaacaattttggcggaaaattccaatttctgagaaaaat
cgagaaatgtctgcaatgttccagaaaaagttctggaacggtccagaattttctagaaaa
ttcgggaaaactctggaatattccagaactttctagaaaattcgataaaattctgaaatg
ttcaatttcgtggaaaaattcaagaaacttctgcaaagttctacacggggttctggctcg
accccgcgctccattggacactgaaatggcgggaaaaaactttgaaatcgcaagaggaat
tttcacgcagcgcgttgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGGAAATTCAAATTTGCAGTGT 356 539 909 Antisense
GGCGGGAAATTCAAATTTTCTCTGA 218 541 1049 Antisense
TTGGCGGAAAATTCCAATTTCTGAG 651 695 1118 Antisense
ATCGAGAAATGTCTGCAATGTTCCA 412 35 1147 Antisense
TGGAACGGTCCAGAATTTTCTAGAA 629 543 1182 Antisense
GGAATATTCCAGAACTTTCTAGAAA 118 533 1223 Antisense
ACTTCTGCAAAGTTCTACACGGGGT 43 103 1295 Antisense
CAAAGTTCTACACGGGGTTCTGGCT 524 191 1302 Antisense
CCGCGCTCCATTGGACACTGAAATG 321 263 1332 Antisense
GCAAGAGGAATTTTCACGCAGCGCG 34 321 1378 Antisense
GGAATTTTCACGCAGCGCGTTGAAA 165 533 1384 Antisense
Sequence Source Affymetrix Proprietary Database