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[172413_at]

Description F52E10.3 /REP_DB=WormBase Gene ID /WP=CE03395 /TR=Q20669 /GB=CAA91054.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 9.5
(-3)
A 		10.6
(-2.9)
A 		53.1
(1.5)
A 		67.2
(3)
P 		58
B 10.6
(3)
A 		8.2
(0.9)
A 		4.6
(-2.1)
A 		3.6
(-3)
A 		7
C 16.5
(-3)
A 		26.4
(1.4)
A 		17.7
(-2.5)
A 		30.1
(3)
A 		14
avr 12.2
(-3) 		15.1
(-2.2) 		25.1
(0.6) 		33.6
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.1
(-1.7)
A 		8.3
(-1.7)
A 		29.4
(3)
A 		14.6
(-0.3)
A 		2.4
(-3)
A 		7.3
(-1.9)
A 		27
B 16
(2.1)
A 		17.6
(2.9)
A 		17.3
(2.7)
A 		5.3
(-3)
A 		8.6
(-1.4)
A 		17.9
(3)
A 		13
C 13.8
(0)
A 		22.3
(3)
A 		10
(-1.3)
A 		15.9
(0.7)
A 		18.1
(1.5)
A 		5.3
(-3)
A 		17
avr 12.6
(-1.1) 		16.1
(1.2) 		18.9
(3) 		11.9
(-1.6) 		9.7
(-3) 		10.2
(-2.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.5
(-2.4)
A 		2.3
(-3)
A 		13.9
(3)
A 		9.8
(0.9)
P 		12
B 3.4
(3)
A 		2
(-0.2)
A 		1.1
(-2.3)
A 		0.8
(-3)
A 		3
C 5.5
(-2)
A 		7.6
(3)
A 		6.2
(-0.4)
A 		5.1
(-3)
A 		3
avr 4.1
(-2.8) 		4
(-3) 		7.1
(3) 		5.2
(-0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		3
(-0.6)
A 		6.4
(3)
A 		3.7
(0.2)
A 		0.7
(-3)
A 		1.8
(-1.8)
A 		6
B 5.6
(1.8)
A 		5.9
(2.1)
A 		4.2
(0.2)
A 		1.4
(-3)
A 		3.5
(-0.6)
A 		6.7
(3)
A 		5
C 5.1
(1)
A 		6.8
(3)
A 		2.6
(-2)
A 		3.2
(-1.3)
A 		5.9
(1.9)
A 		1.8
(-3)
A 		5
avr 4.1
(0.2) 		5.2
(3) 		4.4
(1) 		2.8
(-3) 		3.4
(-1.5) 		3.4
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17923
Sequence Type Exemplar sequence
Representative Public ID F52E10.3 NCBI
Target Description F52E10.3 /REP_DB=WormBase Gene ID /WP=CE03395 /TR=Q20669 /GB=CAA91054.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078251 NCBI Caenorhabditis elegans F52E10.3 (F52E10.3) mRNA, complete cds. 11/11 None
F52E10.3 ENSEMBL cdna:known chromosome:CEL140:X:16283716:16283982:1 gene:F52E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16283715-16283982(+) 74.67 100.0
Public Domain and Genome References
Gene Title
Ensembl F52E10.3
Entrez Gene 186118 Entrez gene
SwissProt Q20669 EMBL-EBI
WormBase CE03395 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91054 Hypothetical protein F52E10.3 [Caenorhabditis elegans] ref|NP_510652.1| F52E10.3 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:172413_AT
gcctctctatccctcaaaaatgtggctccggggggtgttcaaaacttttttaaagtaccg
tcaaagttctttttttttatgtaacatttttatagcacctgaacaaggggtccatcatac
tgaagagcctgatgaacgatattttttatgttacgtgctaaaaatatcactaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCTCTATCCCTCAAAAATGTGG 288 281 15 Antisense
CTCTATCCCTCAAAAATGTGGCTCC 306 229 19 Antisense
TCAAAAATGTGGCTCCGGGGGGTGT 646 189 28 Antisense
GTAACATTTTTATAGCACCTGAACA 702 461 95 Antisense
AGCACCTGAACAAGGGGTCCATCAT 420 77 108 Antisense
GAACAAGGGGTCCATCATACTGAAG 322 353 115 Antisense
GGGGTCCATCATACTGAAGAGCCTG 139 499 121 Antisense
GAAGAGCCTGATGAACGATATTTTT 232 339 136 Antisense
GAGCCTGATGAACGATATTTTTTAT 687 385 139 Antisense
CGATATTTTTTATGTTACGTGCTAA 684 247 151 Antisense
GTTACGTGCTAAAAATATCACTAAA 578 445 164 Antisense
Sequence Source Affymetrix Proprietary Database