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[172412_x_at]

Description ZK402.4 /REP_DB=WormBase Gene ID /WP=CE05076 /TR=Q23476 /GB=AAA81755.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 9
(-2.5)
A 		9.3
(-2.4)
A 		32.9
(3)
A 		6.6
(-3)
A 		26
B 5.3
(-3)
A 		9.6
(-2.1)
A 		13.5
(-1.3)
A 		33.8
(3)
A 		29
C 18.6
(-1.1)
A 		9
(-2.7)
A 		44.6
(3)
A 		6.9
(-3)
A 		38
avr 11
(-2.5) 		9.3
(-3) 		30.3
(3) 		15.8
(-1.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 79.8
(3)
A 		4.2
(-3)
A 		4.6
(-3)
A 		34.3
(-0.6)
A 		18.8
(-1.8)
A 		11.3
(-2.4)
A 		76
B 23.3
(2.1)
A 		5.2
(-2.7)
A 		26.7
(3)
A 		5.8
(-2.6)
A 		8.5
(-1.9)
A 		4.2
(-3)
A 		23
C 5.1
(-3)
A 		24.3
(3)
A 		10.7
(-1.3)
A 		7.9
(-2.1)
A 		7.8
(-2.2)
A 		15
(0.1)
A 		19
avr 36.1
(3) 		11.2
(-2.8) 		14
(-2.1) 		16
(-1.7) 		11.7
(-2.7) 		10.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.3
(-1.2)
A 		2
(-2.2)
A 		8.6
(3)
A 		1
(-3)
A 		8
B 1.7
(-3)
A 		2.4
(-2.2)
A 		3.1
(-1.5)
A 		7.2
(3)
A 		6
C 6.2
(-0.9)
A 		2.6
(-2.4)
A 		15.6
(3)
A 		1.2
(-3)
A 		14
avr 3.7
(-1.8) 		2.3
(-3) 		9.1
(3) 		3.1
(-2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.7
(3)
A 		1.5
(-2.8)
A 		1
(-3)
A 		8.7
(0.4)
A 		5.7
(-0.9)
A 		2.7
(-2.3)
A 		14
B 8.1
(3)
A 		1.7
(-2.8)
A 		6.5
(1.5)
A 		1.5
(-3)
A 		3.5
(-1.2)
A 		1.6
(-2.9)
A 		7
C 1.9
(-2.7)
A 		7.4
(3)
A 		2.7
(-1.9)
A 		1.6
(-3)
A 		2.5
(-2.1)
A 		5
(0.5)
A 		6
avr 8.2
(3) 		3.5
(-2.5) 		3.4
(-2.6) 		3.9
(-2.1) 		3.9
(-2.1) 		3.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172412_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18478
Sequence Type Exemplar sequence
Representative Public ID ZK402.4 NCBI
Target Description ZK402.4 /REP_DB=WormBase Gene ID /WP=CE05076 /TR=Q23476 /GB=AAA81755.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZK402.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK402.4 ZK402.4 /REP_DB=WormBase Gene ID /WP=CE05076 /TR=Q23476 /GB=AAA81755.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1397390-1397486(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172412_X_AT
atggaggaagtggatgagaccgacttgttccttcaaagtgatcaagcaggagatcaagga
agagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGGAAGTGGATGAGACCGACT 92 53 13 Antisense
GGAGGAAGTGGATGAGACCGACTTG 81 515 15 Antisense
AGGAAGTGGATGAGACCGACTTGTT 681 53 17 Antisense
AGTGGATGAGACCGACTTGTTCCTT 301 59 21 Antisense
GTGGATGAGACCGACTTGTTCCTTC 665 489 22 Antisense
TGAGACCGACTTGTTCCTTCAAAGT 187 527 27 Antisense
AGACCGACTTGTTCCTTCAAAGTGA 478 69 29 Antisense
ACCGACTTGTTCCTTCAAAGTGATC 374 87 31 Antisense
CGACTTGTTCCTTCAAAGTGATCAA 696 251 33 Antisense
TGTTCCTTCAAAGTGATCAAGCAGG 297 563 38 Antisense
TCAAGCAGGAGATCAAGGAAGAGCA 6 341 54 Antisense
Sequence Source Affymetrix Proprietary Database