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[172411_x_at]

Description T24A6.1 /REP_DB=WormBase Gene ID /WP=CE14124 /TR=O61951 /GB=AAC17791.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 09      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 19.7
(-3)
A 		61.5
(-0.2)
A 		56.8
(-0.5)
A 		108.2
(3)
A 		89
B 44.6
(-3)
A 		52.8
(-2)
A 		66.9
(-0.2)
A 		91.7
(3)
A 		47
C 44.2
(-2.2)
A 		32.4
(-3)
A 		34.1
(-2.9)
A 		125.8
(3)
A 		93
avr 36.2
(-3) 		48.9
(-1.9) 		52.6
(-1.6) 		108.6
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 34
(-3)
A 		40.6
(-2.6)
A 		68.4
(-1)
A 		74.8
(-0.6)
A 		125.3
(2.3)
A 		136.9
(3)
A 		103
B 68.9
(-1.4)
A 		86.5
(0.5)
A 		65.3
(-1.7)
A 		53.5
(-3)
A 		56.9
(-2.6)
M 		109.9
(3)
A 		56
C 55.5
(-3)
A 		93.7
(-1.7)
A 		115.6
(-1)
A 		94.4
(-1.7)
A 		57.2
(-2.9)
M 		237.9
(3)
M 		182
avr 52.8
(-3) 		73.6
(-1.9) 		83.1
(-1.3) 		74.2
(-1.8) 		79.8
(-1.5) 		161.6
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.2
(-3)
A 		13.3
(1.3)
A 		14.8
(2.3)
A 		15.8
(3)
A 		9
B 14.2
(-1.9)
A 		13
(-3)
A 		15.5
(-0.7)
A 		19.6
(3)
A 		7
C 14.6
(-0.3)
A 		9.3
(-3)
A 		11.9
(-1.7)
A 		21.2
(3)
A 		12
avr 12
(-2.9) 		11.9
(-3) 		14.1
(-1.1) 		18.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 6.3
(-3)
A 		14.4
(-1.5)
A 		14.9
(-1.4)
A 		19
(-0.6)
A 		37.8
(3)
A 		33.3
(2.1)
A 		32
B 24
(-0.8)
A 		28.8
(0.3)
A 		15.9
(-2.6)
A 		14.2
(-3)
A 		23.1
(-1)
M 		41
(3)
A 		27
C 20.6
(-2.8)
A 		28.6
(-2)
A 		29.4
(-1.9)
A 		19
(-3)
A 		18.5
(-3)
M 		79.6
(3)
M 		61
avr 17
(-3) 		23.9
(-1.8) 		20.1
(-2.5) 		17.4
(-2.9) 		26.5
(-1.3) 		51.3
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172411_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15111
Sequence Type Exemplar sequence
Representative Public ID T24A6.1 NCBI
Target Description T24A6.1 /REP_DB=WormBase Gene ID /WP=CE14124 /TR=O61951 /GB=AAC17791.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071600(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071600 NCBI Caenorhabditis elegans T24A6.1 (T24A6.1) mRNA, complete cds. 9/11 None
T24A6.1 ENSEMBL cdna:known chromosome:CEL140:V:3558942:3560346:1 gene:T24A6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067937 2/11 Cross Hyb Matching Probes A 
NM_064731 3/11 Cross Hyb Matching Probes A 
NM_078190 6/11 Cross Hyb Matching Probes A 
NM_071605 2/11 Cross Hyb Matching Probes A 
NM_073819 1/11 Cross Hyb Matching Probes A 
NM_073820 4/11 Cross Hyb Matching Probes A 
NM_066279 1/11 Cross Hyb Matching Probes A 
SNAP00000008674 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 3/11 Cross Hyb Matching Probes None
SNAP00000017785 3/11 Cross Hyb Matching Probes None
SNAP00000014612 3/11 Cross Hyb Matching Probes None
GENEFINDER00000014619 3/11 Cross Hyb Matching Probes None
SNAP00000016557 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 1/11 Cross Hyb Matching Probes None
SNAP00000026432 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026435 2/11 Cross Hyb Matching Probes None
SNAP00000027433 7/11 Cross Hyb Matching Probes None
GENEFINDER00000027446 8/11 Cross Hyb Matching Probes None
SNAP00000038617 5/11 Cross Hyb Matching Probes None
GENEFINDER00000038626 5/11 Cross Hyb Matching Probes None
SNAP00000010126 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010128 1/11 Cross Hyb Matching Probes None
F27D4.3 2/11 Cross Hyb Matching Probes None
W02A11.6 2/11 Cross Hyb Matching Probes None
ZK1225.7 3/11 Cross Hyb Matching Probes None
W05G11.2 3/11 Cross Hyb Matching Probes A 
C03B8.2 1/11 Cross Hyb Matching Probes A 
C04C3.4 2/11 Cross Hyb Matching Probes A 
F40C5.3 2/11 Cross Hyb Matching Probes A 
W02F12.1 3/11 Cross Hyb Matching Probes None
T07F10.2 1/11 Cross Hyb Matching Probes A 
T07F10.5 4/11 Cross Hyb Matching Probes A 
ZK678.3 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3558941-3560346(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24A6.1
Entrez Gene 188821 Entrez gene
SwissProt O61951 EMBL-EBI
WormBase CE38422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17791 Hypothetical protein T24A6.1 [Caenorhabditis elegans] ref|NP_504001.2| T24A6.1 [Caenorhabditis elegans] 7.0E-51
blast AAC17791 Hypothetical protein T24A6.1 [Caenorhabditis elegans] ref|NP_504001.2| T24A6.1 [Caenorhabditis elegans] 1.0E-46
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 3.0E-26
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 4.0E-26
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 5.0E-21
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:172411_X_AT
aactggttggaatgacgtcgatgatgatcaaaaaaatacgagaaaatcttcccaacaacc
caacagtacccgacattcttttgatggagcgattcttgattggaaagttcgaatttgtcg
tcgctaagcccacaccatcttggctcggatcatgctttgcaaagagaattaaccttacaa
aatttattttttcatttttcatgttcaataaacacaatttttctctttttgtattaacat
ttaataacaaaaagcagtattcccgaacccgttcgtcttcaccatccgtgccgacaccgc
ctactgtggagcctcaaagaatgggcacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGTTGGAATGACGTCGATGAT 410 143 23 Antisense
CCAACAGTACCCGACATTCTTTTGA 593 275 82 Antisense
GTACCCGACATTCTTTTGATGGAGC 663 457 88 Antisense
TTTGATGGAGCGATTCTTGATTGGA 51 667 102 Antisense
GGAAAGTTCGAATTTGTCGTCGCTA 399 527 124 Antisense
TCGAATTTGTCGTCGCTAAGCCCAC 665 599 131 Antisense
CTTGGCTCGGATCATGCTTTGCAAA 520 217 161 Antisense
TATTTTTTCATTTTTCATGTTCAAT 299 663 207 Antisense
TCAATAAACACAATTTTTCTCTTTT 443 633 227 Antisense
CCGCCTACTGTGGAGCCTCAAAGAA 96 263 319 Antisense
GGAGCCTCAAAGAATGGGCACAACT 491 521 330 Antisense
Sequence Source Affymetrix Proprietary Database