[Home] | [Total List]

[172410_x_at]

Description ZK402.2 /REP_DB=WormBase Gene ID /WP=CE05074 /TR=Q23479 /GB=AAA81758.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 44      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 150.9
(3)
P 		139.9
(1.2)
P 		133.3
(0.2)
P 		113.8
(-3)
A 		37
B 146.8
(1.3)
P 		170.3
(3)
M 		132.5
(0.3)
P 		86.9
(-3)
A 		83
C 181.5
(3)
P 		167.9
(2)
M 		98.3
(-3)
P 		98.1
(-3)
A 		83
avr 159.7
(3) 		159.4
(3) 		121.4
(-0.8) 		99.6
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 268.9
(2.4)
P 		180.7
(-0.5)
P 		211.6
(0.5)
P 		287.4
(3)
P 		111.5
(-2.7)
P 		102.5
(-3)
P 		185
B 282.6
(3)
P 		189.3
(0.1)
P 		200.3
(0.5)
P 		180.5
(-0.2)
P 		251
(2)
P 		88.8
(-3)
P 		194
C 285.9
(3)
P 		215.7
(1)
P 		183.2
(0.1)
P 		206
(0.8)
P 		226.3
(1.3)
P 		71.8
(-3)
P 		214
avr 279.1
(3) 		195.2
(0.4) 		198.4
(0.5) 		224.6
(1.3) 		196.3
(0.4) 		87.7
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 54.9
(3)
P 		30.4
(-0.8)
P 		34.9
(-0.1)
P 		16.7
(-3)
A 		38
B 46.8
(3)
P 		42.1
(2)
M 		30.7
(-0.4)
P 		18.5
(-3)
A 		28
C 60.1
(3)
P 		48.3
(1.4)
M 		34.3
(-0.6)
P 		16.5
(-3)
A 		44
avr 53.9
(3) 		40.3
(0.8) 		33.3
(-0.4) 		17.2
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 49.6
(0.1)
P 		64.3
(1.9)
P 		46.1
(-0.4)
P 		72.9
(3)
P 		33.6
(-1.9)
P 		25
(-3)
P 		48
B 98.3
(2.7)
P 		63
(-0.4)
P 		48.6
(-1.7)
P 		47.8
(-1.7)
P 		102
(3)
P 		33.1
(-3)
P 		69
C 106
(3)
P 		65.8
(0.1)
P 		46.6
(-1.3)
P 		41.4
(-1.7)
P 		73.2
(0.6)
P 		24
(-3)
P 		82
avr 84.6
(3) 		64.4
(0.9) 		47.1
(-0.9) 		54
(-0.2) 		69.6
(1.4) 		27.4
(-3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172410_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18464
Sequence Type Exemplar sequence
Representative Public ID ZK402.2 NCBI
Target Description ZK402.2 /REP_DB=WormBase Gene ID /WP=CE05074 /TR=Q23479 /GB=AAA81758.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075862 NCBI Caenorhabditis elegans ZK402.2 (ZK402.2) mRNA, complete cds. 11/11 None
GENEFINDER00000013816 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1403739:1404852:1 11/11 None
ZK402.2 ENSEMBL cdna:known chromosome:CEL140:X:1403739:1404112:1 gene:ZK402.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075861 4/11 Cross Hyb Matching Probes A 
NM_075860 6/11 Cross Hyb Matching Probes A 
NM_072077 2/11 Cross Hyb Matching Probes A 
SNAP00000006236 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006239 2/11 Cross Hyb Matching Probes None
SNAP00000013812 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013818 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013817 4/11 Cross Hyb Matching Probes None
SNAP00000013813 4/11 Cross Hyb Matching Probes None
SNAP00000013815 6/11 Cross Hyb Matching Probes None
CD4.8 2/11 Cross Hyb Matching Probes A 
ZK402.5 6/11 Cross Hyb Matching Probes A 
ZK402.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1403738-1404112(+) 100.0 100.0
chrX:1400034-1402683(-) 99.09 99.09
Public Domain and Genome References
Gene Title
Ensembl ZK402.2
Entrez Gene 191312 Entrez gene
SwissProt Q23479 EMBL-EBI
WormBase CE05074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81758 Hypothetical protein ZK402.2 [Caenorhabditis elegans] ref|NP_508263.1| ZK402.2 [Caenorhabditis elegans] 1.0E-58
blast AAA81758 Hypothetical protein ZK402.2 [Caenorhabditis elegans] ref|NP_508263.1| ZK402.2 [Caenorhabditis elegans] 6.0E-54
blast AAA81759 Hypothetical protein ZK402.1 [Caenorhabditis elegans] ref|NP_508264.1| ZK402.1 [Caenorhabditis elegans] 4.0E-52
blast AAA81756 Hypothetical protein ZK402.5 [Caenorhabditis elegans] ref|NP_508261.1| ZK402.5 [Caenorhabditis elegans] 7.0E-41
blast NP_504478 CD4.8 [Caenorhabditis elegans] gb|AAB88346.1| Hypothetical protein CD4.8 [Caenorhabditis elegans] 4.0E-40
blast AAA81756 Hypothetical protein ZK402.5 [Caenorhabditis elegans] ref|NP_508261.1| ZK402.5 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 8.7E-47
Sequence
Target Sequence 
>C. ELEGANS:172410_X_AT
atgaacgcggtttggtggcaggtgcgaaatttagctccctggctgggggtgggaaattta
gctccacatactaccgccgatgacgtaagattgatgacttttcttgttgaaaagacgaaa
gaagccaatgagccactggtggcaacaaaagttttcatggagttcggtaaaaaagaaaat
gccagatgttcggatggagcctattatcgaaaattccataaaaagcttgcgccaaacatg
gatcaactggacaattacagtattgaaagccgtctccgagtgatgcttgggcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGCGGTTTGGTGGCAGGTGC 87 43 13 Antisense
GTGGCAGGTGCGAAATTTAGCTCCC 37 491 27 Antisense
TTAGCTCCCTGGCTGGGGGTGGGAA 670 625 43 Antisense
GAAATTTAGCTCCACATACTACCGC 176 363 65 Antisense
CACATACTACCGCCGATGACGTAAG 683 187 77 Antisense
GAAGCCAATGAGCCACTGGTGGCAA 519 345 133 Antisense
GCCAGATGTTCGGATGGAGCCTATT 549 279 193 Antisense
GGAGCCTATTATCGAAAATTCCATA 545 521 208 Antisense
AAGCTTGCGCCAAACATGGATCAAC 197 151 235 Antisense
ACAGTATTGAAAGCCGTCTCCGAGT 683 105 269 Antisense
CGTCTCCGAGTGATGCTTGGGCTTG 662 245 283 Antisense
Sequence Source Affymetrix Proprietary Database