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[172408_x_at]

Description ZK402.1 /REP_DB=WormBase Gene ID /WP=CE05073 /TR=Q23480 /GB=AAA81759.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 26.3
(-2.1)
A 		85.8
(3)
A 		63.1
(1.1)
A 		15.7
(-3)
A 		70
B 34.5
(3)
A 		27.1
(1)
A 		12.1
(-3)
A 		16.7
(-1.8)
A 		22
C 36.2
(0.4)
A 		16.8
(-3)
A 		51.2
(3)
A 		43.6
(1.7)
A 		34
avr 32.3
(-0.7) 		43.2
(3) 		42.1
(2.6) 		25.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 46.5
(-0.1)
A 		26.8
(-3)
A 		36.7
(-1.6)
A 		67.9
(3)
A 		46.7
(-0.1)
A 		43
(-0.6)
P 		41
B 27
(-0.4)
A 		13.5
(-3)
A 		44.2
(3)
A 		16.4
(-2.4)
A 		19.1
(-1.9)
A 		42.5
(2.7)
A 		31
C 42.1
(-2.4)
A 		62.4
(3)
A 		56.6
(1.4)
A 		46.8
(-1.2)
A 		47.6
(-1)
A 		40
(-3)
A 		22
avr 38.5
(-0.8) 		34.2
(-3) 		45.8
(3) 		43.7
(1.9) 		37.8
(-1.1) 		41.8
(0.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.6
(-0.3)
A 		18.6
(3)
A 		16.5
(2.2)
A 		2.3
(-3)
A 		16
B 11
(3)
A 		6.7
(-0.1)
A 		2.8
(-3)
A 		3.6
(-2.4)
A 		8
C 12
(0.3)
A 		4.8
(-3)
A 		17.8
(3)
A 		7.4
(-1.8)
A 		13
avr 10.9
(1.9) 		10
(1.2) 		12.4
(3) 		4.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.6
(-2.6)
A 		9.5
(-2)
A 		8
(-3)
A 		17.2
(3)
A 		14.1
(1)
A 		10.5
(-1.4)
P 		9
B 9.4
(-0.3)
A 		4.5
(-2.9)
A 		10.7
(0.3)
A 		4.3
(-3)
A 		7.7
(-1.2)
A 		15.8
(3)
A 		12
C 15.6
(0.9)
A 		19
(3)
A 		14.4
(0.1)
A 		9.4
(-3)
A 		15.4
(0.8)
A 		13.4
(-0.5)
A 		10
avr 11.2
(-1.1) 		11
(-1.6) 		11
(-1.6) 		10.3
(-3) 		12.4
(1.3) 		13.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172408_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18572
Sequence Type Exemplar sequence
Representative Public ID ZK402.1 NCBI
Target Description ZK402.1 /REP_DB=WormBase Gene ID /WP=CE05073 /TR=Q23480 /GB=AAA81759.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075863 NCBI Caenorhabditis elegans ZK402.1 (ZK402.1) mRNA, complete cds. 11/11 None
ZK402.1 ENSEMBL cdna:known chromosome:CEL140:X:1404266:1406096:1 gene:ZK402.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075860 6/11 Cross Hyb Matching Probes A 
NM_060958 1/11 Cross Hyb Matching Probes A 
NM_072077 3/11 Cross Hyb Matching Probes A 
SNAP00000025720 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025737 1/11 Cross Hyb Matching Probes None
SNAP00000006236 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006239 3/11 Cross Hyb Matching Probes None
SNAP00000013812 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013818 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013816 5/11 Cross Hyb Matching Probes None
SNAP00000013815 4/11 Cross Hyb Matching Probes None
C01A2.1 1/11 Cross Hyb Matching Probes A 
CD4.8 3/11 Cross Hyb Matching Probes A 
ZK402.5 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1404265-1406096(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK402.1
Entrez Gene 191311 Entrez gene
SwissProt Q23480 EMBL-EBI
WormBase CE05073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81759 Hypothetical protein ZK402.1 [Caenorhabditis elegans] ref|NP_508264.1| ZK402.1 [Caenorhabditis elegans] 1.0E-137
blast AAA81756 Hypothetical protein ZK402.5 [Caenorhabditis elegans] ref|NP_508261.1| ZK402.5 [Caenorhabditis elegans] 1.0E-54
blast NP_504478 CD4.8 [Caenorhabditis elegans] gb|AAB88346.1| Hypothetical protein CD4.8 [Caenorhabditis elegans] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508264.1 1 173-195
ZK402.1 1 173-195
Sequence
Target Sequence 
>C. ELEGANS:172408_X_AT
ggacggatatccgaagcctgagccagttgatttcgattttgaagaactcctcaatagaga
ttcaacctataatttgctcatcgatcattcgcaagaatataaagaagtgatgatggaaga
gaacaatcagccaactatttatgggaacatcccacgaaaggtcgacaaaggaccgagtat
tcctcgaaggaaaccgaagaactcagtgttcaaaaacgataagaaagttcccatgaggga
cttcacgacggatgaggaggagaagacaccgcgattccccagccaatactttcccatttt
cccatccacaatttcataccattttttctgtattcttacttttcatataataaagttcat
tcttatcacaagtgtgagctttcttttaaaatctcttcaattggacagtgacgacgatga
ggtgcaatacatcggagcgatgaagggacagccgaagcctgaaccaatcttcgaaggatt
tgcaccacataattcgaatagcgatcatgtgcaagaagaacaaaaaactggtgttccacg
cttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGGATATCCGAAGCCTGAGCCA 176 525 213 Antisense
GCCTGAGCCAGTTGATTTCGATTTT 180 283 228 Antisense
TATAATTTGCTCATCGATCATTCGC 119 661 280 Antisense
GCCAACTATTTATGGGAACATCCCA 312 277 342 Antisense
TTCCCATGAGGGACTTCACGACGGA 546 695 440 Antisense
AGGAGGAGAAGACACCGCGATTCCC 53 57 467 Antisense
TTCCCATCCACAATTTCATACCATT 599 697 511 Antisense
GTGAGCTTTCTTTTAAAATCTCTTC 576 481 586 Antisense
ACAGCCGAAGCCTGAACCAATCTTC 315 109 660 Antisense
GAAGGATTTGCACCACATAATTCGA 321 335 685 Antisense
AAAAACTGGTGTTCCACGCTTCGAT 9 131 735 Antisense
Sequence Source Affymetrix Proprietary Database