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[172407_x_at]

Description C07G2.2B /REP_DB=WormBase Gene ID /WP=CE19688 /TR=Q17801 /GB=CAA83680.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1203
1 2 3 4 range
A 1853.8
(3)
P 		1152.8
(-1.1)
P 		835.9
(-3)
P 		1067.6
(-1.6)
P 		1018
B 2024.1
(3)
P 		986.1
(-2.8)
P 		951.9
(-3)
P 		957.9
(-3)
P 		1072
C 2038.4
(3)
P 		1100.2
(-2.2)
P 		960.6
(-3)
P 		1026.7
(-2.6)
P 		1078
avr 1972.1
(3) 		1079.7
(-2.1) 		916.1
(-3) 		1017.4
(-2.4) 		1056

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1131
1 2 3 4 5 6 range
A 1452.3
(3)
P 		1432.1
(2.8)
P 		918.7
(-3)
P 		1007.2
(-2)
P 		934
(-2.8)
P 		1068.2
(-1.3)
P 		534
B 1308.1
(3)
P 		1204.3
(1.6)
P 		1114.5
(0.4)
P 		949.1
(-1.9)
P 		866.6
(-3)
P 		1019.2
(-0.9)
P 		442
C 1997.7
(3)
P 		1170.8
(-1.9)
P 		1107.7
(-2.3)
P 		988.4
(-3)
P 		1071.5
(-2.5)
P 		1033.9
(-2.7)
P 		1009
avr 1586
(3) 		1269.1
(-0) 		1047
(-2.1) 		981.6
(-2.8) 		957.4
(-3) 		1040.4
(-2.2) 		629
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 675
(3)
P 		250.2
(-1.9)
P 		218.5
(-2.3)
P 		156.3
(-3)
P 		519
B 645.5
(3)
P 		243.5
(-2.5)
P 		220.6
(-2.8)
P 		204.1
(-3)
P 		441
C 674.8
(3)
P 		316.3
(-1.3)
P 		334.8
(-1.1)
P 		173.1
(-3)
P 		502
avr 665.1
(3) 		270
(-1.9) 		258
(-2) 		177.8
(-3) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 267.7
(-1.7)
P 		509.3
(3)
P 		200.1
(-3)
P 		255.5
(-1.9)
P 		281.8
(-1.4)
P 		260.1
(-1.8)
P 		309
B 455.1
(3)
P 		400.9
(1.4)
P 		270.6
(-2.4)
P 		251.4
(-3)
P 		352.1
(-0)
P 		380.1
(0.8)
P 		204
C 740.4
(3)
P 		357.2
(-1.2)
P 		281.9
(-2.1)
P 		198.8
(-3)
P 		346.7
(-1.4)
P 		346.1
(-1.4)
P 		542
avr 487.7
(3) 		422.5
(1.5) 		250.9
(-2.6) 		235.2
(-3) 		326.9
(-0.8) 		328.8
(-0.8) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172407_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7651
Sequence Type Exemplar sequence
Representative Public ID C07G2.2B NCBI
Target Description C07G2.2B /REP_DB=WormBase Gene ID /WP=CE19688 /TR=Q17801 /GB=CAA83680.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065513(11), NM_001025990(11), NM_065512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065513 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 A 
NM_001025990 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 None
NM_065512 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-7) (atf-7) mRNA, complete cds. 11/11 A 
SNAP00000003823 ENSEMBL cdna:SNAP chromosome:CEL140:III:4492272:4494386:-1 11/11 None
GENEFINDER00000003826 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4492272:4501475:-1 10/11 None
C07G2.2a.3 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499447:-1 gene:C07G2.2 11/11 A 
C07G2.2a.4 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499094:-1 gene:C07G2.2 11/11 None
C07G2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499009:-1 gene:C07G2.2 11/11 A 
C07G2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:4491598:4499011:-1 gene:C07G2.2 11/11 A 
C07G2.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494416:-1 gene:C07G2.2 11/11 None
C07G2.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:4491668:4494442:-1 gene:C07G2.2 11/11 None
C07G2.2b ENSEMBL cdna:known chromosome:CEL140:III:4492272:4498501:-1 gene:C07G2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4492271-4498501(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63430 Hypothetical protein C07G2.2a [Caenorhabditis elegans] ref|NP_497914.2| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAA83680 Hypothetical protein C07G2.2b [Caenorhabditis elegans] ref|NP_497913.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
blast CAD88215 Hypothetical protein C07G2.2c [Caenorhabditis elegans] ref|NP_001021161.1| ATF (cAMP-dependent transciption factor) family member (atf-7) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:172407_X_AT
ggagcaatatgtcatcttcgggatctgatcaagatcagtctgcagatatgtcaaatgctg
gatcaactgcttcaacgagtactggaaatccagttggacgtccacaaaacggtacacctg
gccgtggacgtggtcgaggaagaagcacaacagccgacatgcaacccgacgagaggagga
atacaattctcgagagaaataaggctgcggctgtgagatatcgtaagaggaagaaggaag
aacatgatgatatgatgggaagagttcaagcaatggaggctgaaaagaatcaattactgg
ctattcagacacaaaatcaagtgctgcgacgggaactcgaaagggtaactgcgttgctta
ctgaaagagagtcacgatgcgtttgtctgaaaggagttccaatgagtgatgagcagcacg
ctgatcatcatcatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAATATGTCATCTTCGGGATC 506 519 869 Antisense
AATGCTGGATCAACTGCTTCAACGA 133 167 922 Antisense
GGACGTCCACAAAACGGTACACCTG 446 523 964 Antisense
CTGGCCGTGGACGTGGTCGAGGAAG 167 241 986 Antisense
GAAGCACAACAGCCGACATGCAACC 308 341 1010 Antisense
GACATGCAACCCGACGAGAGGAGGA 312 367 1024 Antisense
AAGGCTGCGGCTGTGAGATATCGTA 399 161 1069 Antisense
ATCAAGTGCTGCGACGGGAACTCGA 596 25 1184 Antisense
AAGGGTAACTGCGTTGCTTACTGAA 605 159 1209 Antisense
GAGAGTCACGATGCGTTTGTCTGAA 140 395 1235 Antisense
CAGCACGCTGATCATCATCATCGAA 278 203 1282 Antisense
Sequence Source Affymetrix Proprietary Database