[Home] | [Total List]

[172406_x_at]

Description Y50E8A.8 /REP_DB=WormBase Gene ID /WP=CE22312 /TR=Q9NAF1 /GB=CAB55053.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 17      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 78.8
(-2)
P 		106.3
(-0.2)
P 		63.4
(-3)
A 		154.3
(3)
P 		91
B 48.5
(-3)
A 		71.7
(3)
A 		55.6
(-1.2)
A 		57
(-0.8)
M 		23
C 92.9
(-2.9)
P 		91
(-3)
M 		93
(-2.9)
P 		176.5
(3)
P 		86
avr 73.4
(-2.7) 		89.7
(-1.1) 		70.7
(-3) 		129.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 129.9
(3)
A 		46.1
(-3)
P 		80.6
(-0.5)
M 		60.2
(-2)
P 		77.7
(-0.7)
M 		85.5
(-0.2)
M 		84
B 61.9
(-2)
A 		59.7
(-2.2)
P 		115
(3)
M 		53
(-2.8)
A 		57
(-2.5)
P 		51.3
(-3)
M 		64
C 79.8
(1.7)
P 		96.7
(3)
P 		20.5
(-3)
A 		28.9
(-2.3)
A 		41.6
(-1.3)
A 		53.7
(-0.4)
A 		76
avr 90.5
(3) 		67.5
(-0.2) 		72
(0.4) 		47.4
(-3) 		58.8
(-1.4) 		63.5
(-0.8) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 28.7
(3)
P 		23.1
(0.2)
P 		16.6
(-3)
A 		22.6
(-0)
P 		12
B 15.5
(0.6)
A 		17.7
(3)
A 		12.9
(-2.2)
A 		12.2
(-3)
M 		6
C 30.8
(1.5)
P 		26.2
(-3)
M 		32.4
(3)
P 		29.8
(0.5)
P 		6
avr 25
(3) 		22.3
(-0.7) 		20.6
(-3) 		21.5
(-1.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 23.9
(3)
A 		16.4
(-2.2)
P 		17.6
(-1.4)
M 		15.3
(-3)
P 		23.4
(2.7)
M 		20.8
(0.8)
M 		9
B 21.5
(0.2)
A 		19.9
(-0.5)
P 		27.9
(3)
M 		14
(-3)
A 		23.2
(1)
P 		19.1
(-0.8)
M 		14
C 29.6
(3)
P 		29.5
(3)
P 		5.2
(-3)
A 		5.8
(-2.9)
A 		13.5
(-1)
A 		18
(0.1)
A 		24
avr 25
(3) 		21.9
(1.6) 		16.9
(-0.7) 		11.7
(-3) 		20
(0.7) 		19.3
(0.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172406_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12683
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.8 NCBI
Target Description Y50E8A.8 /REP_DB=WormBase Gene ID /WP=CE22312 /TR=Q9NAF1 /GB=CAB55053.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074241 NCBI Caenorhabditis elegans Y50E8A.8 (Y50E8A.8) mRNA, complete cds. 11/11 None
SNAP00000008986 ENSEMBL cdna:SNAP chromosome:CEL140:V:14760162:14760884:1 11/11 None
GENEFINDER00000009985 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14757062:14760884:1 11/11 None
Y50E8A.8 ENSEMBL cdna:known chromosome:CEL140:V:14760207:14760884:1 gene:Y50E8A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073699 2/11 Cross Hyb Matching Probes A 
NM_060983 3/11 Cross Hyb Matching Probes A 
SNAP00000019595 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019613 3/11 Cross Hyb Matching Probes None
SNAP00000007085 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007112 2/11 Cross Hyb Matching Probes None
SNAP00000035997 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036009 1/11 Cross Hyb Matching Probes None
Y87G2A.12 3/11 Cross Hyb Matching Probes A 
K01D12.2 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14760206-14760884(+) 74.34 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50E8A.8
Entrez Gene 190109 Entrez gene
SwissProt Q9NAF1 EMBL-EBI
WormBase CE22312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55053 Hypothetical protein Y50E8A.8 [Caenorhabditis elegans] ref|NP_506642.1| Y50E8A.8 [Caenorhabditis elegans] 1.0E-134
blast CAB55053 Hypothetical protein Y50E8A.8 [Caenorhabditis elegans] ref|NP_506642.1| Y50E8A.8 [Caenorhabditis elegans] 1.0E-133
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 1.0E-121
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 1.0E-118
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 1.0E-110
blast XP_226158 PREDICTED: similar to mal5 [Rattus norvegicus] 2.0E-63
blast CAA99870 Hypothetical protein K01D12.2 [Caenorhabditis elegans] ref|NP_506100.1| K01D12.2 [Caenorhabditis elegans] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009985 14 15-35,85-107,243-265,429-451,461-483,488-510,548-570,577-599,614-636,649-671,695-717,724-746,761-783,796-818
Sequence
Target Sequence 
>C. ELEGANS:172406_X_AT
aaggacacgcagcagttgaatccaaaagatcaggaccgacacgattcaaaacttcaaaac
aatttcattgaaaccgtggaaacaaagtcaacaaagcgagtcaacaatgaagcattttct
ccagttgcaatggagaaatacggacaaagcagaatcagtttttcttctaaaaaacaactc
actgccacacattacacaccagctgaagaatcacataactttggattcaatctccacgta
ctcgaccacaagataacaactcaatggcaagaagataagcatccctgggatccagggaca
caacaaaggtatcaactagcgcctcgaacacaatggatgcctacaccactgctcgatcaa
gcagcgatattgtcatttctgagtatactgtatatttttagcattcctcatggaccttca
acttgcaatgtgttttcaatctggcctcaatggaattttgggaactctaacaattattgg
atgccaatcggacaaggttcacacttcttctcttatttgctgccgcctcaaagcgccgcc
aatctccaatttcgattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGACACGCAGCAGTTGAATCCAA 159 161 61 Antisense
GGACCGACACGATTCAAAACTTCAA 639 523 93 Antisense
GAAGCATTTTCTCCAGTTGCAATGG 422 341 169 Antisense
AAAAAACAACTCACTGCCACACATT 399 129 229 Antisense
TGGATTCAATCTCCACGTACTCGAC 83 551 282 Antisense
TATCAACTAGCGCCTCGAACACAAT 575 657 370 Antisense
CACAATGGATGCCTACACCACTGCT 638 193 389 Antisense
TTAGCATTCCTCATGGACCTTCAAC 460 681 458 Antisense
GCAATGTGTTTTCAATCTGGCCTCA 685 321 485 Antisense
TCGGACAAGGTTCACACTTCTTCTC 448 599 548 Antisense
GCCGCCAATCTCCAATTTCGATTGC 673 285 595 Antisense
Sequence Source Affymetrix Proprietary Database