[Home] | [Total List]

[172404_x_at]

Description T07F10.5 /REP_DB=WormBase Gene ID /WP=CE06398 /TR=Q22319 /GB=CAB01244.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 66.1
(-2.6)
A 		62.8
(-3)
A 		78.7
(-1.1)
A 		114.3
(3)
A 		52
B 92.6
(-0.3)
A 		67.6
(-2)
A 		52.3
(-3)
A 		141.2
(3)
A 		89
C 81.7
(-2.4)
A 		68.7
(-3)
A 		87.2
(-2.2)
M 		203
(3)
A 		134
avr 80.1
(-2) 		66.4
(-3) 		72.7
(-2.6) 		152.8
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 140
(2.1)
M 		81
(-3)
A 		89.9
(-2.2)
A 		101.9
(-1.2)
P 		150
(3)
P 		118.3
(0.2)
M 		69
B 87.7
(-2.8)
A 		87.6
(-2.8)
P 		84.1
(-3)
A 		89.2
(-2.7)
A 		142
(0.3)
P 		189.1
(3)
P 		105
C 70.6
(-2.9)
A 		131.5
(-0.6)
P 		68.7
(-3)
P 		104.5
(-1.6)
P 		111.1
(-1.3)
M 		222.6
(3)
P 		154
avr 99.4
(-1.8) 		100
(-1.8) 		80.9
(-3) 		98.5
(-1.9) 		134.4
(0.4) 		176.7
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.1
(3)
A 		13.6
(-3)
A 		20.6
(1)
A 		16.7
(-1.2)
A 		11
B 29.5
(2.8)
A 		16.7
(-1.5)
A 		12.1
(-3)
A 		30.1
(3)
A 		18
C 27
(-0)
A 		19.8
(-3)
A 		30.4
(1.4)
M 		34.2
(3)
A 		14
avr 26.9
(2.9) 		16.7
(-3) 		21
(-0.5) 		27
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 25.8
(-1.6)
M 		28.8
(-0.9)
A 		19.6
(-3)
A 		25.8
(-1.6)
P 		45.3
(3)
P 		28.8
(-0.9)
M 		26
B 30.5
(-1.8)
A 		29.1
(-2)
P 		20.4
(-3)
A 		23.6
(-2.6)
A 		57.7
(1.5)
P 		70.5
(3)
P 		50
C 26.2
(-2.1)
A 		40.1
(-0.6)
P 		17.5
(-3)
P 		21
(-2.6)
P 		36
(-1.1)
M 		74.5
(3)
P 		57
avr 27.5
(-1.7) 		32.7
(-0.9) 		19.2
(-3) 		23.5
(-2.3) 		46.3
(1.2) 		57.9
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172404_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14588
Sequence Type Exemplar sequence
Representative Public ID T07F10.5 NCBI
Target Description T07F10.5 /REP_DB=WormBase Gene ID /WP=CE06398 /TR=Q22319 /GB=CAB01244.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073820 NCBI Caenorhabditis elegans T07F10.5 (T07F10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000014619 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12868504:12869095:1 9/11 None
T07F10.5 ENSEMBL cdna:known chromosome:CEL140:V:12868505:12869138:1 gene:T07F10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067937 4/11 Cross Hyb Matching Probes A 
NM_064731 3/11 Cross Hyb Matching Probes A 
NM_078190 3/11 Cross Hyb Matching Probes A 
NM_066279 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000019308 2/11 Cross Hyb Matching Probes None
SNAP00000019301 2/11 Cross Hyb Matching Probes None
SNAP00000002425 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029924 1/11 Cross Hyb Matching Probes None
SNAP00000029922 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017793 3/11 Cross Hyb Matching Probes None
SNAP00000017785 3/11 Cross Hyb Matching Probes None
SNAP00000029927 4/11 Cross Hyb Matching Probes None
SNAP00000014612 8/11 Cross Hyb Matching Probes None
GENEFINDER00000020019 2/11 Cross Hyb Matching Probes None
SNAP00000027433 3/11 Cross Hyb Matching Probes None
SNAP00000038617 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038626 3/11 Cross Hyb Matching Probes None
W02A11.6 2/11 Cross Hyb Matching Probes None
W05G11.2 3/11 Cross Hyb Matching Probes A 
C03B8.2 1/11 Cross Hyb Matching Probes A 
C04C3.4 4/11 Cross Hyb Matching Probes A 
ZK678.3 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12762860-12763141(+) 94.44 94.44
chrIII:58456-58724(+) 96.11 96.11
chrIII:7716086-7716367(+) 95.0 95.0
chrIV:3394368-3394648(+) 97.22 97.22
chrV:12868866-12869138(+) 100.0 100.0
chrV:3559270-3559539(+) 91.67 91.67
chrX:8148364-8148640(+) 86.11 91.67
chrII:2018856-2019135(-) 96.67 96.67
chrV:12376221-12376501(-) 93.89 93.89
chrX:8409695-8409974(-) 96.11 96.11
chrX:15748400-15748679(-) 95.56 95.56
chrX:4239609-4239889(-) 94.44 94.44
Public Domain and Genome References
Gene Title
Ensembl T07F10.5
Entrez Gene 188237 Entrez gene
SwissProt Q22319 EMBL-EBI
WormBase CE06398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71146 Hypothetical protein W05G11.2 [Caenorhabditis elegans] ref|NP_497132.1| W05G11.2 [Caenorhabditis elegans] 3.0E-38
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 3.0E-31
blast CAB01244 Hypothetical protein T07F10.5 [Caenorhabditis elegans] ref|NP_506221.1| T07F10.5 [Caenorhabditis elegans] 8.0E-30
blast AAB92025 Hypothetical protein C04C3.4 [Caenorhabditis elegans] ref|NP_500338.1| C04C3.4 [Caenorhabditis elegans] 2.0E-25
blast CAB01905 Hypothetical protein ZK678.3 [Caenorhabditis elegans] ref|NP_510591.1| ZK678.3 [Caenorhabditis elegans] 1.0E-23
blast CAA82372 Hypothetical protein ZK507.6 [Caenorhabditis elegans] ref|NP_499018.1| ZK507.6 [Caenorhabditis elegans] sp|P34638|CCNA1_CAEEL G2/mitotic-specific cyclin A1 gb|AAA84393.1| cyclin A 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172404_X_AT
tgcggaatgatgtcaaactcctcgagctgtcgccgatagatgctcattatctacgttacc
gcccatctgatgctgatcagaatcacagaatcaacaattcgaccaaatttatttgttcat
ttttcatgttcaataaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGAATGATGTCAAACTCCTCGA 221 581 14 Antisense
ATGATGTCAAACTCCTCGAGCTGTC 109 47 20 Antisense
CTCGAGCTGTCGCCGATAGATGCTC 671 231 34 Antisense
AGCTGTCGCCGATAGATGCTCATTA 403 81 38 Antisense
AGATGCTCATTATCTACGTTACCGC 477 67 51 Antisense
TTACCGCCCATCTGATGCTGATCAG 184 659 69 Antisense
GATGCTGATCAGAATCACAGAATCA 601 413 82 Antisense
ATCACAGAATCAACAATTCGACCAA 426 27 95 Antisense
AATTCGACCAAATTTATTTGTTCAT 486 171 109 Antisense
TATTTGTTCATTTTTCATGTTCAAT 110 663 123 Antisense
TGTTCATTTTTCATGTTCAATAAAC 16 563 127 Antisense
Sequence Source Affymetrix Proprietary Database