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[172403_x_at]

Description F36H5.2 /REP_DB=WormBase Gene ID /WP=CE27157 /TR=P91299 /GB=AAK31521.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_total > 66      4grp_total > 02      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 808
1 2 3 4 range
A 111.4
(-2.7)
P 		101.5
(-2.8)
P 		82.5
(-3)
P 		692.4
(3)
P 		610
B 80.7
(-3)
P 		117.7
(-2.7)
P 		86.7
(-3)
P 		888.3
(3)
P 		808
C 126.2
(-2.8)
P 		97.9
(-3)
P 		100.3
(-3)
P 		868.5
(3)
P 		771
avr 106.1
(-2.9) 		105.7
(-2.9) 		89.8
(-3) 		816.4
(3) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 41.4
(-3)
A 		207.4
(-0.2)
P 		213.7
(-0.1)
P 		279.7
(1)
P 		172.7
(-0.8)
P 		399.5
(3)
P 		358
B 82.6
(-3)
P 		212.2
(-1.5)
P 		314
(-0.3)
P 		158.6
(-2.1)
P 		175
(-1.9)
P 		598.1
(3)
P 		516
C 127
(-3)
P 		226.2
(-1.7)
P 		225.4
(-1.8)
P 		166.8
(-2.5)
P 		127.3
(-3)
P 		601
(3)
P 		474
avr 83.7
(-3) 		215.3
(-1.2) 		251
(-0.8) 		201.7
(-1.4) 		158.3
(-2) 		532.9
(3) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 40.6
(-1.6)
P 		22
(-3)
P 		21.6
(-3)
P 		101.3
(3)
P 		80
B 25.7
(-2.8)
P 		29.1
(-2.7)
P 		20.1
(-3)
P 		189.3
(3)
P 		169
C 41.8
(-2.3)
P 		28.1
(-3)
P 		35
(-2.7)
P 		146.4
(3)
P 		118
avr 36
(-2.5) 		26.4
(-3) 		25.6
(-3) 		145.7
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 7.6
(-3)
A 		73.8
(1.4)
P 		46.5
(-0.4)
P 		70.9
(1.2)
P 		52.1
(-0)
P 		97.3
(3)
P 		90
B 28.7
(-3)
P 		70.6
(-1.7)
P 		76.3
(-1.5)
P 		42
(-2.6)
P 		71.1
(-1.7)
P 		223
(3)
P 		194
C 47.1
(-2.5)
P 		69
(-1.7)
P 		57.4
(-2.1)
P 		33.5
(-3)
P 		41.2
(-2.7)
P 		201.2
(3)
P 		168
avr 27.8
(-3) 		71.1
(-1.2) 		60.1
(-1.7) 		48.8
(-2.1) 		54.8
(-1.9) 		173.8
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172403_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4478
Sequence Type Exemplar sequence
Representative Public ID F36H5.2 NCBI
Target Description F36H5.2 /REP_DB=WormBase Gene ID /WP=CE27157 /TR=P91299 /GB=AAK31521.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182203(11), NM_182204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182203 NCBI Caenorhabditis elegans F36H5.2b (F36H5.2) mRNA, complete cds. 11/11 None
NM_182204 NCBI Caenorhabditis elegans F36H5.2c (F36H5.2) mRNA, complete cds. 11/11 None
SNAP00000028525 ENSEMBL cdna:SNAP chromosome:CEL140:II:1768185:1770958:1 11/11 None
GENEFINDER00000028541 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1768185:1770958:1 11/11 None
F36H5.2b ENSEMBL cdna:known chromosome:CEL140:II:1768356:1771050:1 gene:F36H5.2 11/11 None
F36H5.2c.2 ENSEMBL cdna:known chromosome:CEL140:II:1768989:1770958:1 gene:F36H5.2 11/11 None
F36H5.2c.1 ENSEMBL cdna:known chromosome:CEL140:II:1769125:1770958:1 gene:F36H5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061674 4/11 Cross Hyb Matching Probes A 
NM_061675 1/11 Cross Hyb Matching Probes A 
NM_182202 1/11 Cross Hyb Matching Probes None
SNAP00000012039 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012056 1/11 Cross Hyb Matching Probes None
SNAP00000028526 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028546 4/11 Cross Hyb Matching Probes None
F36H5.1.2 4/11 Cross Hyb Matching Probes None
F36H5.1.1 4/11 Cross Hyb Matching Probes None
C08F1.4a 1/11 Cross Hyb Matching Probes A 
C08F1.4b 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173545 3 2 NM_182203 172403_x_at (11)
NM_182204 172403_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1768183-1770957(+) 100.0 100.0
Public Domain and Genome References
Ensembl F36H5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM98020 Hypothetical protein F36H5.2b [Caenorhabditis elegans] ref|NP_872003.1| F36H5.2b [Caenorhabditis elegans] 0.0
blast T25743 hypothetical protein F36H5.2 - Caenorhabditis elegans 0.0
blast T25744 hypothetical protein F36H5.1 - Caenorhabditis elegans 0.0
blast AAO38641 Hypothetical protein F36H5.2c [Caenorhabditis elegans] ref|NP_872004.1| F36H5.2c [Caenorhabditis elegans] 0.0
blast AAK31520 Hypothetical protein F36H5.1 [Caenorhabditis elegans] ref|NP_494075.1| F36H5.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.7E-5
Pfam IPR002083 EMBL-EBI MATH 3.2E-30
Pfam IPR002083 EMBL-EBI MATH 3.2E-19
Pfam IPR002083 EMBL-EBI MATH 3.1E-31
Pfam IPR002083 EMBL-EBI MATH 6.7E-32
Pfam IPR002083 EMBL-EBI MATH 3.8E-9
Pfam IPR002083 EMBL-EBI MATH 3.1E-31
Pfam IPR002083 EMBL-EBI MATH 6.7E-32
Pfam IPR002083 EMBL-EBI MATH 4.1E-13
Pfam IPR002083 EMBL-EBI MATH 3.2E-30
Pfam IPR002083 EMBL-EBI MATH 7.6E-15
Pfam IPR002083 EMBL-EBI MATH 3.1E-31
Pfam IPR002083 EMBL-EBI MATH 6.7E-32
Pfam IPR002083 EMBL-EBI MATH 6.4E-15
Pfam IPR002083 EMBL-EBI MATH 3.2E-19
Pfam IPR002083 EMBL-EBI MATH 3.1E-31
Pfam IPR002083 EMBL-EBI MATH 6.7E-32
Sequence
Target Sequence 
>C. ELEGANS:172403_X_AT
gagcattgaagctagcgttcaacgcatactcgttggagcaaatggtaaaagactcactga
ctattttgagcatacttttgaaaagcccgattcgattggggattcgaaactcattagatg
ggaggacatgttggatcagtatgcggtggaggatagtttaacagttgaagcacgagtggt
gtatacgaaaattatcgatcctcaaccagagtactcgttcataatgtgtcataccgtcaa
aaaactatcaaatgttcgagaaggagaatttcattttagcaaaaccgaacagcattgtga
tgctccatggagaatttccttgaaaaaagaagaagcgtgtattttgatatatctccattg
tgacaaattattatccaacgatgaacactggtcgattcaagtcgaggttcaacttgtttt
ggggtcagaaactgggagaactttaactgacaaggtcactcacattttcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATTGAAGCTAGCGTTCAACGC 698 387 1461 Antisense
GCGTTCAACGCATACTCGTTGGAGC 292 269 1475 Antisense
AAAGCCCGATTCGATTGGGGATTCG 151 121 1542 Antisense
GTTGAAGCACGAGTGGTGTATACGA 439 435 1624 Antisense
GAAAATTATCGATCCTCAACCAGAG 444 353 1647 Antisense
GATCCTCAACCAGAGTACTCGTTCA 218 417 1657 Antisense
GTACTCGTTCATAATGTGTCATACC 397 459 1671 Antisense
GCAAAACCGAACAGCATTGTGATGC 324 317 1739 Antisense
GATGAACACTGGTCGATTCAAGTCG 562 411 1840 Antisense
GAGGTTCAACTTGTTTTGGGGTCAG 476 49 1864 Antisense
GACAAGGTCACTCACATTTTCAATG 421 365 1909 Antisense
Sequence Source Affymetrix Proprietary Database