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[172402_at]

Description R13A1.1 /REP_DB=WormBase Gene ID /WP=CE04837 /TR=Q21979 /GB=AAA81478.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 7.3
(-3)
A 		8.7
(-2.7)
A 		34.5
(3)
A 		10.3
(-2.3)
A 		27
B 9.8
(2.6)
A 		5.8
(-1.3)
A 		10.2
(3)
A 		4
(-3)
A 		6
C 7.2
(-3)
A 		9.1
(-2.5)
A 		12.6
(-1.4)
A 		28.1
(3)
A 		21
avr 8.1
(-2.9) 		7.9
(-3) 		19.1
(3) 		14.1
(0.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8.7
(-2)
A 		6.4
(-2.4)
A 		5.5
(-2.6)
A 		6
(-2.5)
A 		35.6
(3)
A 		3.1
(-3)
A 		33
B 27.7
(1.3)
A 		36.9
(3)
A 		6.3
(-2.6)
A 		4.1
(-3)
A 		18.2
(-0.4)
A 		4
(-3)
A 		33
C 7
(-0.8)
A 		14.5
(3)
A 		4
(-2.3)
A 		5.8
(-1.4)
A 		7.4
(-0.6)
A 		2.7
(-3)
A 		12
avr 14.5
(0.9) 		19.3
(2.6) 		5.3
(-2.3) 		5.3
(-2.3) 		20.4
(3) 		3.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.7
(-2)
A 		1.9
(-2.7)
A 		9
(3)
A 		1.5
(-3)
A 		8
B 3.1
(3)
A 		1.4
(-1.4)
A 		2.4
(1.2)
A 		0.8
(-3)
A 		2
C 2.4
(-3)
A 		2.6
(-2.5)
A 		4.4
(2.2)
A 		4.7
(3)
A 		2
avr 2.7
(-1.7) 		2
(-3) 		5.3
(3) 		2.3
(-2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.6
(-2.5)
A 		2.3
(-2)
A 		1.2
(-2.7)
A 		1.5
(-2.5)
A 		10.7
(3)
A 		0.7
(-3)
A 		10
B 9.6
(1.6)
A 		12.3
(3)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		7.4
(0.4)
A 		1.5
(-2.8)
A 		11
C 2.6
(-0.1)
A 		4.4
(3)
A 		1
(-2.8)
A 		1.2
(-2.5)
A 		2.4
(-0.4)
A 		0.9
(-3)
A 		4
avr 4.6
(0.7) 		6.3
(2.5) 		1.2
(-2.8) 		1.3
(-2.7) 		6.8
(3) 		1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8722
Sequence Type Exemplar sequence
Representative Public ID R13A1.1 NCBI
Target Description R13A1.1 /REP_DB=WormBase Gene ID /WP=CE04837 /TR=Q21979 /GB=AAA81478.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068742 NCBI Caenorhabditis elegans R13A1.1 (R13A1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000003742 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7219824:7221985:1 11/11 None
R13A1.1 ENSEMBL cdna:known chromosome:CEL140:IV:7219824:7220371:1 gene:R13A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7219829-7220377(+) 93.42 100.0
Public Domain and Genome References
Gene Title
Ensembl R13A1.1
Entrez Gene 187849 Entrez gene
SwissProt Q21979 EMBL-EBI
WormBase CE04837 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501143 R13A1.1 [Caenorhabditis elegans] gb|AAA81478.1| Hypothetical protein R13A1.1 [Caenorhabditis elegans] 3.0E-38
blast NP_501143 R13A1.1 [Caenorhabditis elegans] gb|AAA81478.1| Hypothetical protein R13A1.1 [Caenorhabditis elegans] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:172402_AT
atgccacaagatagttcccaggggagacctcgtggtgatgacgtttgggtggcagaagct
aagtatgattgtaatacacgtgggcgaaacagtataatgggaaacggggcattaaaatac
aggacggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCACAAGATAGTTCCCAGGGGA 457 41 13 Antisense
GATAGTTCCCAGGGGAGACCTCGTG 77 425 22 Antisense
TTCCCAGGGGAGACCTCGTGGTGAT 547 695 27 Antisense
GGGAGACCTCGTGGTGATGACGTTT 478 495 34 Antisense
GTGGTGATGACGTTTGGGTGGCAGA 310 489 44 Antisense
GATGACGTTTGGGTGGCAGAAGCTA 390 411 49 Antisense
GGGTGGCAGAAGCTAAGTATGATTG 82 499 59 Antisense
GTATGATTGTAATACACGTGGGCGA 582 453 75 Antisense
CACGTGGGCGAAACAGTATAATGGG 551 199 89 Antisense
TGGGAAACGGGGCATTAAAATACAG 599 497 110 Antisense
GGGGCATTAAAATACAGGACGGAAT 9 11 118 Antisense
Sequence Source Affymetrix Proprietary Database