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[172399_x_at]

Description T23B3.5 /REP_DB=WormBase Gene ID /WP=CE14016 /TR=P91488 /GB=AAB42334.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 71.4
(-0.3)
A 		55
(-2.5)
A 		95.2
(3)
A 		51.7
(-3)
A 		44
B 7.9
(-3)
A 		33.1
(-0.7)
A 		48.1
(0.7)
A 		72.9
(3)
A 		65
C 71.1
(0.9)
A 		66.3
(0)
A 		49
(-3)
A 		83.1
(3)
A 		34
avr 50.1
(-3) 		51.5
(-2.6) 		64.1
(1.4) 		69.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 131.1
(-0.7)
A 		62.6
(-2.7)
A 		65.4
(-2.6)
A 		52.9
(-3)
A 		142
(-0.4)
P 		254.7
(3)
P 		202
B 74.5
(-1.6)
A 		83.2
(-1.3)
A 		22
(-3)
A 		41.6
(-2.5)
A 		171.4
(1.1)
P 		239.3
(3)
P 		217
C 63.3
(-1.9)
A 		86.5
(-1.2)
A 		50.6
(-2.3)
A 		26.5
(-3)
A 		195.2
(1.9)
P 		231.7
(3)
P 		205
avr 89.6
(-1.5) 		77.4
(-1.9) 		46
(-2.8) 		40.3
(-3) 		169.5
(0.8) 		241.9
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26
(3)
A 		11.9
(-1.6)
A 		24.9
(2.6)
A 		7.6
(-3)
A 		18
B 2.5
(-3)
A 		8.2
(-0.4)
A 		11.1
(1)
A 		15.5
(3)
A 		13
C 23.5
(3)
A 		19.1
(0.2)
A 		17.1
(-1)
A 		14
(-3)
A 		10
avr 17.3
(2.5) 		13.1
(-2.2) 		17.7
(3) 		12.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 24.2
(-1.7)
A 		22.3
(-1.9)
A 		14.2
(-2.9)
A 		13.4
(-3)
A 		42.8
(0.6)
P 		62
(3)
P 		49
B 25.9
(-1.5)
A 		27.7
(-1.4)
A 		5.3
(-3)
A 		11
(-2.6)
A 		69.6
(1.6)
P 		89.3
(3)
P 		84
C 23.5
(-1.5)
A 		26.4
(-1.2)
A 		12.9
(-2.4)
A 		5.3
(-3)
A 		63.2
(1.8)
P 		77.6
(3)
P 		72
avr 24.5
(-1.7) 		25.5
(-1.6) 		10.8
(-2.9) 		9.9
(-3) 		58.5
(1.4) 		76.3
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172399_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2425
Sequence Type Exemplar sequence
Representative Public ID T23B3.5 NCBI
Target Description T23B3.5 /REP_DB=WormBase Gene ID /WP=CE14016 /TR=P91488 /GB=AAB42334.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059518 NCBI Caenorhabditis elegans T23B3.5 (T23B3.5) mRNA, complete cds. 11/11 None
SNAP00000020981 ENSEMBL cdna:SNAP chromosome:CEL140:I:6713766:6714492:-1 11/11 None
GENEFINDER00000020987 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6713766:6714492:-1 11/11 None
T23B3.5 ENSEMBL cdna:known chromosome:CEL140:I:6713701:6714512:-1 gene:T23B3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068288 5/11 Cross Hyb Matching Probes A 
SNAP00000020609 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020617 5/11 Cross Hyb Matching Probes None
E03H12.5 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4977271-4977998(+) 45.28 93.55
chrI:6713694-6714421(-) 38.36 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B3.5
Entrez Gene 172387 Entrez gene
SwissProt P91488 EMBL-EBI
WormBase CE14016 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172399_X_AT
gttcgactacctgcattttgcacttctactcgttgccccacttgctgcacttattggatg
tggaggaaagaagaagccaccaccgccaaaatcggcttccaaaatgggcccacctccacc
agcacctgcaccacccactgctccggaagctgctccagcggcgccgaccccagatgcagc
tgccgcggctcctgctgaaggagagaagaaggatggtgagaagaagagcgagaagaagga
cggagataagaaggaagaggagaaaaaggatgaagagaagaaggatggagacaagaaaga
ggatgataagaaggatgaaaagaaggacgaggacaagaaggacgagaaaaaggatgcgga
tgaaaagaaggatgaagagaaaaaggatgacaagaaggatgaaaagaaggacgaaaagaa
ggacgaaaagaaagatgaaaagaaagaaaagtccaagaaatccaagaagtcgagcaaatc
caaaaagtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGACTACCTGCATTTTGCACTT 463 441 21 Antisense
TGCATTTTGCACTTCTACTCGTTGC 501 579 32 Antisense
CCCCACTTGCTGCACTTATTGGATG 97 261 56 Antisense
TGCTGCACTTATTGGATGTGGAGGA 644 581 63 Antisense
GAGGAAAGAAGAAGCCACCACCGCC 408 403 83 Antisense
CACCGCCAAAATCGGCTTCCAAAAT 510 199 101 Antisense
GCCAAAATCGGCTTCCAAAATGGGC 426 277 105 Antisense
CCGCGGCTCCTGCTGAAGGAGAGAA 350 263 203 Antisense
GAAGGACGAGGACAAGAAGGACGAG 71 335 342 Antisense
GTCCAAGAAATCCAAGAAGTCGAGC 82 477 471 Antisense
GAAGTCGAGCAAATCCAAAAAGTCC 538 335 486 Antisense
Sequence Source Affymetrix Proprietary Database