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[172398_x_at] --- /// --- /// --- /// ---

Description F31E3.6 /REP_DB=WormBase Gene ID /WP=CE01242 /TR=Q19935 /GB=AAA81692.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 77      4grp_total > 03      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 154.9
(-2.9)
A 		150.6
(-3)
A 		186.4
(-2.5)
A 		559.8
(3)
P 		409
B 172.8
(-1.7)
A 		181.7
(-1.6)
A 		95.2
(-3)
A 		458.8
(3)
P 		364
C 223.6
(-1.7)
P 		182.9
(-2.2)
M 		126
(-3)
M 		562.8
(3)
P 		437
avr 183.8
(-2.3) 		171.7
(-2.5) 		135.9
(-3) 		527.1
(3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 136.8
(-3)
A 		163.5
(-1.4)
A 		154.7
(-1.9)
A 		163.2
(-1.4)
P 		153.1
(-2)
M 		234.3
(3)
P 		98
B 179.4
(-0.2)
A 		151.6
(-3)
P 		210.3
(3)
P 		166.9
(-1.4)
P 		185.3
(0.4)
P 		207.4
(2.7)
P 		59
C 195.2
(0.3)
P 		160.3
(-2.1)
M 		207.4
(1.1)
A 		146.8
(-3)
A 		213.4
(1.6)
P 		234.5
(3)
P 		88
avr 170.5
(-1.9) 		158.5
(-3) 		190.8
(-0.1) 		159
(-3) 		183.9
(-0.7) 		225.4
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 56.4
(-0.1)
A 		32.7
(-3)
A 		48.7
(-1.1)
A 		82
(3)
P 		49
B 55.1
(-0.4)
A 		44.9
(-1.2)
A 		22.1
(-3)
A 		97.8
(3)
P 		76
C 74
(0.5)
P 		52.6
(-2)
M 		43.9
(-3)
M 		94.9
(3)
P 		51
avr 61.8
(-0.3) 		43.4
(-2.4) 		38.2
(-3) 		91.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 25.2
(-3)
A 		58.1
(3)
A 		33.7
(-1.4)
A 		41.4
(-0)
P 		46.2
(0.8)
M 		57.1
(2.8)
P 		33
B 62.4
(0.3)
A 		50.5
(-1.9)
P 		51.1
(-1.7)
P 		44.2
(-3)
P 		75.3
(2.6)
P 		77.3
(3)
P 		33
C 72.4
(2.3)
P 		48.9
(-0.6)
M 		52.8
(-0.1)
A 		29.5
(-3)
A 		69.1
(1.8)
P 		78.5
(3)
P 		49
avr 53.3
(-0.3) 		52.5
(-0.4) 		45.9
(-1.6) 		38.4
(-3) 		63.5
(1.6) 		71
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172398_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6925
Sequence Type Exemplar sequence
Representative Public ID F31E3.6 NCBI
Target Description F31E3.6 /REP_DB=WormBase Gene ID /WP=CE01242 /TR=Q19935 /GB=AAA81692.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066125, NM_059610, NM_065575, NM_065576
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F31E3.6 ENSEMBL cdna:known chromosome:CEL140:III:6982441:6982993:1 gene:F31E3.6 A 
NM_059610 NCBI Caenorhabditis elegans F22D6.7 (F22D6.7) mRNA, complete cds. A 
F22D6.7 ENSEMBL cdna:known chromosome:CEL140:I:7107899:7108033:-1 gene:F22D6.7 A 
NM_066125 NCBI Caenorhabditis elegans F31E3.6 (F31E3.6) mRNA, complete cds. A 
F31E3.6 ENSEMBL cdna:known chromosome:CEL140:III:6982441:6982993:1 gene:F31E3.6 A 
NM_066125 NCBI Caenorhabditis elegans F31E3.6 (F31E3.6) mRNA, complete cds. A 
F31E3.6 ENSEMBL cdna:known chromosome:CEL140:III:6982441:6982993:1 gene:F31E3.6 A 
NM_065576 NCBI Caenorhabditis elegans B0393.8 (B0393.8) mRNA, complete cds. A 
NM_066125 NCBI Caenorhabditis elegans F31E3.6 (F31E3.6) mRNA, complete cds. A 
VB0393L.2 ENSEMBL cdna:known chromosome:CEL140:III:4749756:4750248:1 gene:VB0393L.2 A 
NM_065575 NCBI Caenorhabditis elegans VB0393L.2 (VB0393L.2) mRNA, complete cds. A 
B0393.8 ENSEMBL cdna:known chromosome:CEL140:III:4751840:4752332:-1 gene:B0393.8 A 
NM_065576 NCBI Caenorhabditis elegans B0393.8 (B0393.8) mRNA, complete cds. A 
F31E3.6 ENSEMBL cdna:known chromosome:CEL140:III:6982441:6982993:1 gene:F31E3.6 A 
NM_066125 NCBI Caenorhabditis elegans F31E3.6 (F31E3.6) mRNA, complete cds. A 
VB0393L.2 ENSEMBL cdna:known chromosome:CEL140:III:4749756:4750248:1 gene:VB0393L.2 A 
NM_065575 NCBI Caenorhabditis elegans VB0393L.2 (VB0393L.2) mRNA, complete cds. A 
B0393.8 ENSEMBL cdna:known chromosome:CEL140:III:4751840:4752332:-1 gene:B0393.8 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059608 3/11 Cross Hyb Matching Probes None
F22D6.6 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6982035-6982642(+) 100.0 100.0
chrIII:4749292-4749899(+) 99.57 99.57
chrI:7106244-7106855(+) 90.6 90.6
chrIII:6984743-6985361(-) 90.6 99.57
chrIII:4752188-4752785(-) 95.3 95.3
Public Domain and Genome References
Gene Title



Ensembl F22D6.7
VB0393L.2
B0393.8
F31E3.6
Entrez Gene 181959 Entrez gene
184828 Entrez gene
185154 Entrez gene
189064 Entrez gene
SwissProt Q9U3S4 EMBL-EBI
Q19728 EMBL-EBI
Q19935 EMBL-EBI
WormBase CE32101 Wormbase
CE05688 Wormbase
CE29302 Wormbase
CE32101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54188 Hypothetical protein B0393.8 [Caenorhabditis elegans] emb|CAB54318.2| Hypothetical protein VB0393L.2 [Caenorhabditis elegans] ref|NP_497976.2| VB0393L.2 [Caenorhabditis elegans] ref|NP_497977.2| B0393.8 [Caenorhabditis elegans] 4.0E-71
blast AAA81692 Hypothetical protein F31E3.6 [Caenorhabditis elegans] ref|NP_498526.1| F31E3.6 [Caenorhabditis elegans] 7.0E-71
blast CAB54188 Hypothetical protein B0393.8 [Caenorhabditis elegans] emb|CAB54318.2| Hypothetical protein VB0393L.2 [Caenorhabditis elegans] ref|NP_497976.2| VB0393L.2 [Caenorhabditis elegans] ref|NP_497977.2| B0393.8 [Caenorhabditis elegans] 2.0E-69
blast AAA81692 Hypothetical protein F31E3.6 [Caenorhabditis elegans] ref|NP_498526.1| F31E3.6 [Caenorhabditis elegans] 2.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498526.1 1 86-105
NP_497977.2 1 86-105
NP_497976.2 1 86-105
VB0393L.2 1 86-105
B0393.8 1 86-105
F31E3.6 1 86-105
Sequence
Target Sequence 
>C. ELEGANS:172398_X_AT
caagtgaatttctcgtcatttctcgacaatttttttgcaatgcaagtgtgcggagaaatg
acgagaaatgacgtgaaattcgcaatttctccgcatttctcgacatccacacataccgta
gttggtgacgttgttggcggcaaatcgcggcgagacccgctagctcgatattgctccaaa
agtcaaatgctcaatctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGAATTTCTCGTCATTTCTCG 199 183 16 Antisense
CGTCATTTCTCGACAATTTTTTTGC 339 247 29 Antisense
TTTTGCAATGCAAGTGTGCGGAGAA 575 677 48 Antisense
GAAATTCGCAATTTCTCCGCATTTC 541 363 90 Antisense
GACATCCACACATACCGTAGTTGGT 79 371 117 Antisense
GTAGTTGGTGACGTTGTTGGCGGCA 142 457 133 Antisense
TTGGCGGCAAATCGCGGCGAGACCC 478 707 149 Antisense
CGAGACCCGCTAGCTCGATATTGCT 292 251 166 Antisense
CCGCTAGCTCGATATTGCTCCAAAA 606 261 172 Antisense
TAGCTCGATATTGCTCCAAAAGTCA 641 651 176 Antisense
CAAAAGTCAAATGCTCAATCTCTGC 674 189 192 Antisense
Sequence Source Affymetrix Proprietary Database