[Home] | [Total List]

[172397_x_at]

Description K09E3.4 /REP_DB=WormBase Gene ID /WP=CE04742 /TR=Q21399 /GB=AAA82376.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 5.4
(-2.7)
A 		2.2
(-3)
A 		9.3
(-2.3)
A 		61.4
(3)
A 		59
B 15.8
(-0.6)
A 		31.9
(3)
A 		4.9
(-3)
A 		7.2
(-2.5)
A 		27
C 2.2
(-2.9)
A 		2.8
(-2.9)
A 		1.6
(-3)
A 		62.2
(3)
A 		61
avr 7.8
(-2.6) 		12.3
(-1.9) 		5.3
(-3) 		43.6
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6
(-3)
A 		10.8
(-2.3)
A 		6.3
(-3)
A 		47.8
(3)
A 		8.9
(-2.6)
A 		6.7
(-2.9)
A 		42
B 3.9
(-2.9)
A 		56
(3)
A 		3.6
(-3)
A 		31.2
(0.2)
A 		3.8
(-2.9)
A 		3.2
(-3)
A 		53
C 3.9
(-2.8)
A 		3.3
(-3)
A 		4.9
(-2.4)
A 		7
(-1.6)
A 		3.9
(-2.8)
A 		19.7
(3)
A 		16
avr 4.6
(-3) 		23.4
(1.7) 		4.9
(-2.9) 		28.7
(3) 		5.5
(-2.8) 		9.9
(-1.7) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(-1.9)
A 		0.5
(-3)
A 		2.4
(-1.7)
A 		9
(3)
A 		9
B 5
(0.4)
A 		7.9
(3)
A 		1.1
(-3)
A 		1.5
(-2.6)
A 		7
C 0.7
(-2.9)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		10.5
(3)
A 		10
avr 2.6
(-1.7) 		3.1
(-1.2) 		1.4
(-3) 		7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3.8
(-1.5)
A 		1.4
(-2.8)
A 		12.1
(3)
A 		2.7
(-2.1)
A 		1.6
(-2.7)
A 		11
B 1.4
(-2.8)
A 		18.6
(3)
A 		0.9
(-3)
A 		8.3
(-0.5)
A 		1.6
(-2.8)
A 		1.2
(-2.9)
A 		18
C 1.4
(-2.6)
A 		1
(-3)
A 		1.2
(-2.8)
A 		1.4
(-2.6)
A 		1.3
(-2.7)
A 		6.6
(3)
A 		6
avr 1.3
(-2.9) 		7.8
(3) 		1.2
(-3) 		7.3
(2.5) 		1.9
(-2.4) 		3.1
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172397_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17415
Sequence Type Exemplar sequence
Representative Public ID K09E3.4 NCBI
Target Description K09E3.4 /REP_DB=WormBase Gene ID /WP=CE04742 /TR=Q21399 /GB=AAA82376.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078372 NCBI Caenorhabditis elegans K09E3.4 (K09E3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000022146 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17119206:17128916:1 11/11 None
K09E3.4 ENSEMBL cdna:known chromosome:CEL140:X:17119206:17119799:1 gene:K09E3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029017 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2161645-2162176(-) 34.38 63.54
Public Domain and Genome References
Gene Title
Ensembl K09E3.4
Entrez Gene 181751 Entrez gene
SwissProt Q21399 EMBL-EBI
WormBase CE04742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 0.0
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 0.0
blast AAA82376 Hypothetical protein K09E3.4 [Caenorhabditis elegans] ref|NP_510773.1| K09E3.4 [Caenorhabditis elegans] 9.0E-11
Sequence
Target Sequence 
>C. ELEGANS:172397_X_AT
atgagaagctcacacagcaatacaggactacctcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAAGCTCACACAGCAATACAG 300 45 13 Antisense
GAGAAGCTCACACAGCAATACAGGA 45 393 15 Antisense
GAAGCTCACACAGCAATACAGGACT 168 343 17 Antisense
AGCTCACACAGCAATACAGGACTAC 558 79 19 Antisense
GCTCACACAGCAATACAGGACTACC 523 301 20 Antisense
CTCACACAGCAATACAGGACTACCT 453 227 21 Antisense
TCACACAGCAATACAGGACTACCTC 528 623 22 Antisense
CACACAGCAATACAGGACTACCTCC 325 195 23 Antisense
ACACAGCAATACAGGACTACCTCCT 212 111 24 Antisense
CACAGCAATACAGGACTACCTCCTC 484 193 25 Antisense
ACAGCAATACAGGACTACCTCCTCT 326 109 26 Antisense
Sequence Source Affymetrix Proprietary Database