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[172395_at]

Description F22F4.4 /REP_DB=WormBase Gene ID /WP=CE07129 /TR=Q19747 /GB=AAA96221.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      4grp_high_8_8 > 15      6grp_total > 94      4grp_total > 08      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 11.4
(-3)
A 		44.6
(-2.4)
P 		96
(-1.5)
P 		345.5
(3)
P 		334
B 22.8
(-3)
A 		43.4
(-2.6)
P 		116.8
(-1.3)
P 		360.1
(3)
P 		337
C 30.8
(-3)
P 		52.6
(-2.4)
P 		78.4
(-1.7)
P 		257.2
(3)
P 		226
avr 21.7
(-3) 		46.9
(-2.5) 		97.1
(-1.5) 		320.9
(3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 7.4
(-3)
A 		43.5
(-1.3)
P 		74.5
(0.1)
P 		111.9
(1.9)
P 		135.8
(3)
P 		83.3
(0.5)
P 		128
B 47.4
(-3)
P 		56.8
(-2.8)
P 		65.9
(-2.6)
P 		94.8
(-1.9)
P 		309.2
(3)
P 		76.6
(-2.3)
P 		262
C 30.5
(-3)
P 		56.2
(-1.7)
P 		68.1
(-1.1)
P 		109.4
(1)
P 		149.3
(3)
P 		126.7
(1.9)
P 		119
avr 28.4
(-3) 		52.2
(-2.2) 		69.5
(-1.5) 		105.4
(-0.3) 		198.1
(3) 		95.5
(-0.6) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 4.1
(-3)
A 		9.7
(-2.3)
P 		25.1
(-0.3)
P 		50.6
(3)
P 		47
B 7.3
(-3)
A 		10.7
(-2.7)
P 		27.1
(-1.3)
P 		76.7
(3)
P 		69
C 10.2
(-3)
P 		15.1
(-2.1)
P 		27.3
(0.1)
P 		43.4
(3)
P 		33
avr 7.2
(-3) 		11.8
(-2.4) 		26.5
(-0.7) 		56.9
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 1.4
(-3)
A 		15.5
(-0.9)
P 		16.2
(-0.8)
P 		28.4
(1.1)
P 		41
(3)
P 		20.3
(-0.1)
P 		40
B 16.5
(-3)
P 		18.9
(-2.8)
P 		16
(-3)
P 		25.1
(-2.5)
P 		125.6
(3)
P 		28.6
(-2.3)
P 		110
C 11.3
(-3)
P 		17.2
(-2)
P 		17.3
(-2)
P 		22
(-1.3)
P 		48.3
(3)
P 		42.4
(2)
P 		37
avr 9.7
(-3) 		17.2
(-2.3) 		16.5
(-2.3) 		25.2
(-1.5) 		71.6
(3) 		30.4
(-1) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16365
Sequence Type Exemplar sequence
Representative Public ID F22F4.4 NCBI
Target Description F22F4.4 /REP_DB=WormBase Gene ID /WP=CE07129 /TR=Q19747 /GB=AAA96221.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076602 NCBI Caenorhabditis elegans F22F4.4 (F22F4.4) mRNA, complete cds. 11/11 None
F22F4.4 ENSEMBL cdna:known chromosome:CEL140:X:5999595:6001490:-1 gene:F22F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6000166-6000393(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22F4.4
Entrez Gene 180867 Entrez gene
SwissProt Q19747 EMBL-EBI
WormBase CE07129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96221 Hypothetical protein F22F4.4 [Caenorhabditis elegans] ref|NP_509003.1| F22F4.4 [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:172395_AT
atgcgtcgcaaaatgtcggtttttagattaatcattaaatcaccactttcaaaaatattc
aacaatttgtcaaaatgtttatcacaacatctacagaaaaagttcaatgacattaaatct
tcacagtaccttcacaagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTCGCAAAATGTCGGTTTTTA 67 41 13 Antisense
GCGTCGCAAAATGTCGGTTTTTAGA 459 291 15 Antisense
ATGTCGGTTTTTAGATTAATCATTA 310 49 25 Antisense
TTAATCATTAAATCACCACTTTCAA 295 685 40 Antisense
AAATCACCACTTTCAAAAATATTCA 308 117 49 Antisense
ACAATTTGTCAAAATGTTTATCACA 45 115 74 Antisense
GTTTATCACAACATCTACAGAAAAA 647 449 89 Antisense
GTTCAATGACATTAAATCTTCACAG 458 445 114 Antisense
GACATTAAATCTTCACAGTACCTTC 138 369 121 Antisense
TTAAATCTTCACAGTACCTTCACAA 174 683 125 Antisense
ATCTTCACAGTACCTTCACAAGACT 409 31 129 Antisense
Sequence Source Affymetrix Proprietary Database