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[172394_x_at]

Description Y65A5A.3 /REP_DB=WormBase Gene ID /WP=CE22720 /TR=Q9XTW4 /GB=CAB07434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.8
(-2.4)
A 		11.5
(3)
A 		1.8
(-3)
A 		2
(-2.9)
A 		10
B 1.5
(-3)
A 		6.6
(3)
A 		1.9
(-2.5)
A 		1.7
(-2.8)
A 		5
C 1.6
(-2.6)
A 		5.4
(3)
A 		1.3
(-3)
A 		2.1
(-1.8)
A 		4
avr 2
(-2.7) 		7.8
(3) 		1.7
(-3) 		1.9
(-2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.8
(3)
A 		1.9
(-3)
A 		4
(-1.4)
A 		1.9
(-3)
A 		4.9
(-0.7)
A 		3.8
(-1.6)
A 		8
B 1.5
(-1.6)
A 		2.8
(0.9)
A 		3
(1.3)
A 		3.7
(2.6)
A 		3.9
(3)
A 		0.8
(-3)
A 		3
C 1.2
(-2.9)
A 		1.1
(-3)
A 		5.6
(3)
A 		2.8
(-0.7)
A 		1.5
(-2.5)
A 		3.5
(0.2)
A 		5
avr 4.2
(3) 		1.9
(-3) 		4.2
(3) 		2.8
(-0.7) 		3.4
(0.9) 		2.7
(-0.9) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-1.1)
A 		2.5
(3)
A 		0.5
(-2.5)
A 		0.3
(-3)
A 		2
B 0.5
(-2.5)
A 		1.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
C 0.5
(-2.5)
A 		1.5
(3)
A 		0.5
(-2.5)
A 		0.4
(-3)
A 		1
avr 0.7
(-1.8) 		1.9
(3) 		0.5
(-2.6) 		0.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.8
(3)
A 		0.7
(-2.1)
A 		0.9
(-1.2)
A 		0.5
(-3)
A 		1.5
(1.6)
A 		0.9
(-1.2)
A 		1
B 0.5
(-2.1)
A 		0.9
(-0.2)
A 		0.7
(-1.2)
A 		1
(0.2)
A 		1.6
(3)
A 		0.3
(-3)
A 		1
C 0.4
(-2.5)
A 		0.3
(-3)
A 		1.4
(3)
A 		0.6
(-1.4)
A 		0.5
(-1.9)
A 		1.2
(1.9)
A 		1
avr 0.9
(0) 		0.6
(-3) 		1
(1) 		0.7
(-2) 		1.2
(3) 		0.8
(-1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172394_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8988
Sequence Type Exemplar sequence
Representative Public ID Y65A5A.3 NCBI
Target Description Y65A5A.3 /REP_DB=WormBase Gene ID /WP=CE22720 /TR=Q9XTW4 /GB=CAB07434.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070553 NCBI Caenorhabditis elegans Y65A5A.3 (Y65A5A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000022389 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16416046:16416526:1 11/11 None
Y65A5A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16416046:16416526:1 gene:Y65A5A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16416051-16416532(+) 95.92 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65A5A.3
Entrez Gene 190479 Entrez gene
SwissProt Q9XTW4 EMBL-EBI
WormBase CE22720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07434 Hypothetical protein Y65A5A.3 [Caenorhabditis elegans] ref|NP_502954.1| Y65A5A.3 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172394_X_AT
ctgacccactggagccgatggatgcagacggcgagccgattcgtcgacgaatatccgaat
ttctcggttttgccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACCCACTGGAGCCGATGGATGC 21 239 25 Antisense
GACCCACTGGAGCCGATGGATGCAG 447 381 27 Antisense
CCACTGGAGCCGATGGATGCAGACG 431 275 30 Antisense
CGATGGATGCAGACGGCGAGCCGAT 680 249 40 Antisense
GATGCAGACGGCGAGCCGATTCGTC 664 411 45 Antisense
GCAGACGGCGAGCCGATTCGTCGAC 190 313 48 Antisense
GGCGAGCCGATTCGTCGACGAATAT 295 541 54 Antisense
GAGCCGATTCGTCGACGAATATCCG 20 387 57 Antisense
TCGTCGACGAATATCCGAATTTCTC 603 599 65 Antisense
CGACGAATATCCGAATTTCTCGGTT 22 251 69 Antisense
TCCGAATTTCTCGGTTTTGCCACCA 87 595 78 Antisense
Sequence Source Affymetrix Proprietary Database