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[172393_x_at]

Description K02F6.1 /REP_DB=WormBase Gene ID /WP=CE11656 /TR=O16635 /GB=AAB66101.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 56.3
(-1)
A 		29.2
(-3)
A 		56.3
(-1)
A 		111.7
(3)
A 		83
B 33.4
(-3)
A 		58.4
(-0.4)
A 		91
(3)
A 		79.4
(1.8)
A 		58
C 62
(-0.9)
A 		39.2
(-2.2)
A 		25.1
(-3)
A 		132.7
(3)
P 		108
avr 50.6
(-2.2) 		42.3
(-3) 		57.5
(-1.6) 		107.9
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 50.6
(-1.6)
A 		42
(-3)
A 		78.6
(3)
A 		65.1
(0.8)
A 		64.3
(0.7)
A 		57.1
(-0.5)
A 		37
B 33.3
(-1.8)
A 		51.3
(-0.2)
A 		18.6
(-3)
A 		19.8
(-2.9)
A 		89.7
(3)
A 		59.3
(0.4)
A 		71
C 18.2
(-3)
A 		127.9
(3)
A 		74.5
(0.1)
A 		75.2
(0.1)
A 		37
(-2)
A 		68.2
(-0.3)
A 		110
avr 34
(-3) 		73.7
(3) 		57.2
(0.5) 		53.4
(-0.1) 		63.7
(1.5) 		61.5
(1.2) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20.5
(3)
A 		6.3
(-3)
A 		14.7
(0.5)
A 		16.4
(1.3)
A 		14
B 10.7
(-3)
A 		14.4
(-0.9)
A 		21.1
(3)
A 		16.9
(0.6)
A 		10
C 20.5
(2.2)
A 		11.3
(-1.9)
A 		8.7
(-3)
A 		22.4
(3)
P 		14
avr 17.2
(1.9) 		10.7
(-3) 		14.8
(0.1) 		18.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 9.3
(-3)
A 		14.9
(0.3)
A 		17.1
(1.6)
A 		16.5
(1.3)
A 		19.4
(3)
A 		13.9
(-0.3)
A 		10
B 11.6
(-1.7)
A 		17.1
(-0.6)
A 		4.5
(-3)
A 		5.2
(-2.9)
A 		36.4
(3)
A 		22.1
(0.3)
A 		32
C 6.7
(-3)
A 		39
(3)
A 		19
(-0.7)
A 		15.1
(-1.4)
A 		12
(-2)
A 		22.8
(-0)
A 		32
avr 9.2
(-3) 		23.7
(3) 		13.5
(-1.2) 		12.3
(-1.7) 		22.6
(2.5) 		19.6
(1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172393_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5445
Sequence Type Exemplar sequence
Representative Public ID K02F6.1 NCBI
Target Description K02F6.1 /REP_DB=WormBase Gene ID /WP=CE11656 /TR=O16635 /GB=AAB66101.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061895 NCBI Caenorhabditis elegans K02F6.1 (K02F6.1) mRNA, complete cds. 11/11 A 
SNAP00000019494 ENSEMBL cdna:SNAP chromosome:CEL140:II:2553963:2556314:1 11/11 None
GENEFINDER00000019500 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2553963:2556314:1 11/11 None
K02F6.1 ENSEMBL cdna:known chromosome:CEL140:II:2553963:2556314:1 gene:K02F6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060119 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000038402 6/11 Cross Hyb Matching Probes None
SNAP00000038378 6/11 Cross Hyb Matching Probes None
SNAP00000021994 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022004 6/11 Cross Hyb Matching Probes None
SNAP00000016607 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016614 6/11 Cross Hyb Matching Probes None
SNAP00000002150 2/11 Cross Hyb Matching Probes None
SNAP00000002151 2/11 Cross Hyb Matching Probes None
SNAP00000024126 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024138 5/11 Cross Hyb Matching Probes None
SNAP00000039412 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039414 8/11 Cross Hyb Matching Probes None
SNAP00000033482 2/11 Cross Hyb Matching Probes None
F30A10.7 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9505798-9508149(+) 47.49 98.38
chrII:2553961-2556313(+) 48.47 100.0
chrV:5146806-5150277(-) 58.76 98.0
Public Domain and Genome References
Gene Title
Ensembl K02F6.1
Entrez Gene 186906 Entrez gene
SwissProt O16635 EMBL-EBI
WormBase CE11656 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 0.0
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 0.0
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:172393_X_AT
aaatttgtcgctcaaggtgtccgtggggaggggagggaagctaatccagttttagtttca
gattcttctgtttttggttttagtgctccagatttgtcagcttgtgagtctgttggttct
cgatctgctcgtgaagtcgtctcgtcggttgccggcaatgctcggaatgcttctggtgca
aatataactacgattcatgtcacggagagcaagagttcgttgaagaaaagccacagaaga
cgtcgccgtgtggctaagagtcgccaatcatatactgctggaagttcgccaatcaaagaa
acccatctggaccccctgctggaatccgatgttgcgagtgacggcgagcgtttccaaccc
ggcatcctcctgcgtcattctcttcgacagagccacccacgacaagttgtgcgaggatca
gccccaaacactgatcatgtctccactcggcgcagaggtcgagataccgcctctggtcgt
gatgcccctagcccaggcataatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTGTCGCTCAAGGTGTCCGTG 560 113 1813 Antisense
GTGAGTCTGTTGGTTCTCGATCTGC 621 483 1916 Antisense
TCGATCTGCTCGTGAAGTCGTCTCG 261 603 1932 Antisense
GGTTGCCGGCAATGCTCGGAATGCT 557 507 1959 Antisense
GACGTCGCCGTGTGGCTAAGAGTCG 371 375 2051 Antisense
CCCCTGCTGGAATCCGATGTTGCGA 325 261 2125 Antisense
TTGCGAGTGACGGCGAGCGTTTCCA 475 699 2144 Antisense
TGCGTCATTCTCTTCGACAGAGCCA 47 583 2183 Antisense
ACAAGTTGTGCGAGGATCAGCCCCA 534 113 2214 Antisense
CCAAACACTGATCATGTCTCCACTC 139 277 2236 Antisense
GCCCCTAGCCCAGGCATAATTTCTG 464 285 2296 Antisense
Sequence Source Affymetrix Proprietary Database