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[172392_x_at]

Description C36F7.4B /REP_DB=WormBase Gene ID /WP=CE24830 /TR=Q9NAR0 /GB=CAB54202.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 269.8
(3)
P 		124.9
(-2.9)
P 		121.2
(-3)
P 		165
(-1.2)
P 		149
B 302.4
(3)
P 		137.5
(-1.2)
P 		69.3
(-3)
P 		84
(-2.6)
A 		233
C 301.3
(3)
P 		134
(-1.2)
P 		63
(-3)
P 		283.4
(2.5)
P 		238
avr 291.2
(3) 		132.1
(-1.6) 		84.5
(-3) 		177.5
(-0.3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 442.8
(3)
P 		187.4
(-1.6)
P 		143.9
(-2.4)
P 		109.7
(-3)
P 		162.4
(-2.1)
P 		117.3
(-2.9)
P 		333
B 407.4
(3)
P 		298.4
(0.7)
P 		125.9
(-3)
P 		169.6
(-2.1)
P 		146.8
(-2.6)
P 		203.8
(-1.3)
P 		282
C 313.1
(3)
P 		303.6
(2.7)
P 		171
(-1.5)
P 		174.3
(-1.4)
P 		125.5
(-3)
P 		219.2
(-0)
P 		188
avr 387.8
(3) 		263.1
(-0.1) 		146.9
(-3) 		151.2
(-2.8) 		144.9
(-3) 		180.1
(-2.1) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 98.3
(3)
P 		27.1
(-2.8)
P 		31.7
(-2.4)
P 		24.1
(-3)
P 		74
B 96.4
(3)
P 		34
(-1.7)
P 		16.1
(-3)
P 		17.9
(-2.9)
A 		80
C 99.7
(3)
P 		38.5
(-1.7)
P 		22
(-3)
P 		47.8
(-1)
P 		78
avr 98.1
(3) 		33.2
(-2.2) 		23.3
(-3) 		29.9
(-2.5) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 81.6
(3)
P 		66.7
(1.3)
P 		31.3
(-2.6)
P 		27.8
(-3)
P 		49
(-0.6)
P 		28.6
(-2.9)
P 		54
B 141.8
(3)
P 		99.3
(0.7)
P 		30.6
(-3)
P 		44.9
(-2.2)
P 		59.6
(-1.4)
P 		76
(-0.6)
P 		111
C 116
(3)
P 		92.6
(1.3)
P 		43.5
(-2.4)
P 		35.1
(-3)
P 		40.6
(-2.6)
P 		73.4
(-0.2)
P 		81
avr 113.1
(3) 		86.2
(0.9) 		35.1
(-3) 		35.9
(-2.9) 		49.7
(-1.9) 		59.3
(-1.1) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172392_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1350
Sequence Type Exemplar sequence
Representative Public ID C36F7.4B NCBI
Target Description C36F7.4B /REP_DB=WormBase Gene ID /WP=CE24830 /TR=Q9NAR0 /GB=CAB54202.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060134 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-5) (rig-5) mRNA, complete cds. 11/11 A 
GENEFINDER00000041486 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9573615:9579642:-1 11/11 None
C36F7.4b ENSEMBL cdna:known chromosome:CEL140:I:9573586:9582500:-1 gene:C36F7.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060135 7/11 Cross Hyb Matching Probes A 
SNAP00000041480 7/11 Cross Hyb Matching Probes None
C36F7.4a.1 7/11 Cross Hyb Matching Probes A 
C36F7.4a.2 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172791 2 1 NM_060134 172392_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9573545-9582431(-) 100.0 100.0
Public Domain and Genome References
Ensembl C36F7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54202 Hypothetical protein C36F7.4b [Caenorhabditis elegans] ref|NP_492535.1| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 0.0
blast CAB02817 Hypothetical protein C36F7.4a [Caenorhabditis elegans] ref|NP_492536.2| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 1.0E-155
blast CAB54202 Hypothetical protein C36F7.4b [Caenorhabditis elegans] ref|NP_492535.1| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 1.0E-118
blast CAB02817 Hypothetical protein C36F7.4a [Caenorhabditis elegans] ref|NP_492536.2| neuRonal IGCAM family member (rig-5) [Caenorhabditis elegans] 6.0E-87
blast CAE60178 Hypothetical protein CBG03733 [Caenorhabditis briggsae] 4.0E-85
blast CAE60178 Hypothetical protein CBG03733 [Caenorhabditis briggsae] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.2E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.021
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-6
Sequence
Target Sequence 
>C. ELEGANS:172392_X_AT
ggacctgttcttcatcttacaaaagtctcaagaaaacacatgagcgagtatctttgtgtt
gcaagtaatggaattccacctgatgaatcttggactgtcaagcttttggttacatttccc
ccactcgttcaagctcaatctgaaacagtgcaagcaagtgttggctcaatggcaagaatg
gtttgcacaacagaagcatggccaagaccggaaatgggatgggaaaaggatggagaacca
gtttatgaaagtaacaatgttgcgatgacgcatactgtatctggtcaataccacagtgtt
cacattcttgaaattagaaatgttcaatcatctcattttggagtttatcggtgcgttgcc
aaaaatgacaatggaatccatcattcacaagtcactcttaatcagatctctcacaatcat
ttcacaaactcgaatttaattccagaagattcagaagaagaagattcacaatcacctcct
caattggaattttattcacaagctcgtcggcatgaatctcggaatgctccaactacacgt
tcagagctccgagcaattcaagtggattcagccagtttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCTGTTCTTCATCTTACAAAAG 692 521 592 Antisense
CCCACTCGTTCAAGCTCAATCTGAA 323 259 711 Antisense
GAGTTTATCGGTGCGTTGCCAAAAA 597 397 932 Antisense
AATCCATCATTCACAAGTCACTCTT 227 167 966 Antisense
AGTCACTCTTAATCAGATCTCTCAC 708 61 981 Antisense
GATCTCTCACAATCATTTCACAAAC 519 419 996 Antisense
TTCACAATCACCTCCTCAATTGGAA 115 685 1056 Antisense
CAAGCTCGTCGGCATGAATCTCGGA 63 187 1090 Antisense
GAATCTCGGAATGCTCCAACTACAC 264 329 1105 Antisense
CAACTACACGTTCAGAGCTCCGAGC 28 189 1121 Antisense
CAAGTGGATTCAGCCAGTTTCCCAT 31 183 1150 Antisense
Sequence Source Affymetrix Proprietary Database