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[172390_x_at]

Description ZK673.10 /REP_DB=WormBase Gene ID /WP=CE16744 /TR=O18299 /GB=CAA88484.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 34      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 63.3
(-3)
P 		105.5
(1.8)
P 		81.1
(-1)
A 		116.6
(3)
P 		53
B 55.1
(-3)
A 		75.1
(3)
A 		55.6
(-2.9)
A 		60.5
(-1.4)
M 		20
C 57.1
(-3)
P 		96.1
(3)
P 		65
(-1.8)
M 		80.8
(0.6)
P 		39
avr 58.5
(-3) 		92.2
(3) 		67.2
(-1.5) 		86
(1.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 119.8
(3)
P 		57.1
(-3)
P 		79.3
(-0.9)
P 		65.3
(-2.2)
A 		70.5
(-1.7)
A 		64.5
(-2.3)
P 		63
B 47.3
(-1.1)
A 		80.4
(2.5)
P 		85
(3)
P 		29.9
(-3)
A 		75.6
(2)
P 		60.3
(0.3)
P 		55
C 88.2
(1.5)
A 		66.6
(-3)
A 		73.5
(-1.6)
A 		95.4
(3)
A 		69.9
(-2.3)
M 		76.5
(-0.9)
P 		29
avr 85.1
(3) 		68
(-1.8) 		79.3
(1.4) 		63.5
(-3) 		72
(-0.6) 		67.1
(-2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 23.1
(3)
P 		22.9
(2.8)
P 		21.2
(1.1)
A 		17.1
(-3)
P 		6
B 17.6
(2)
A 		18.5
(3)
A 		12.9
(-3)
A 		12.9
(-3)
M 		6
C 18.9
(-0.7)
P 		27.6
(3)
P 		22.7
(0.9)
M 		13.6
(-3)
P 		14
avr 19.9
(0.8) 		23
(3) 		18.9
(0.1) 		14.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 22.1
(3)
P 		20.3
(1.3)
P 		17.3
(-1.5)
P 		16.6
(-2.2)
A 		21.3
(2.3)
A 		15.7
(-3)
P 		6
B 16.5
(-0.7)
A 		26.8
(2)
P 		20.6
(0.3)
P 		7.9
(-3)
A 		30.7
(3)
P 		22.5
(0.8)
P 		23
C 32.7
(3)
A 		20.3
(-2.3)
A 		18.7
(-3)
A 		19.2
(-2.8)
A 		22.6
(-1.3)
M 		25.6
(-0)
P 		14
avr 23.8
(2.4) 		22.5
(1.6) 		18.9
(-0.5) 		14.6
(-3) 		24.9
(3) 		21.3
(0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172390_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3711
Sequence Type Exemplar sequence
Representative Public ID ZK673.10 NCBI
Target Description ZK673.10 /REP_DB=WormBase Gene ID /WP=CE16744 /TR=O18299 /GB=CAA88484.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063849 NCBI Caenorhabditis elegans ZK673.10 (ZK673.10) mRNA, complete cds. 11/11 None
SNAP00000007631 ENSEMBL cdna:SNAP chromosome:CEL140:II:10464780:10465208:1 11/11 None
GENEFINDER00000007635 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10464780:10468017:1 11/11 None
ZK673.10 ENSEMBL cdna:known chromosome:CEL140:II:10464780:10465208:1 gene:ZK673.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063856 4/11 Cross Hyb Matching Probes A 
NM_063847 1/11 Cross Hyb Matching Probes A 
SNAP00000005235 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005250 4/11 Cross Hyb Matching Probes None
SNAP00000007629 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007638 1/11 Cross Hyb Matching Probes None
ZK673.5 1/11 Cross Hyb Matching Probes A 
ZK666.4 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10464776-10465205(+) 98.83 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-37
Ensembl ZK673.10
Entrez Gene 191391 Entrez gene
SwissProt O18299 EMBL-EBI
WormBase CE16744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88482 Hypothetical protein ZK673.7 [Caenorhabditis elegans] ref|NP_496251.1| TropoNin C family member (tnc-2) [Caenorhabditis elegans] sp|Q09665|TNNC2_CAEEL Troponin C, isoform 2 dbj|BAB84566.1| troponin C [Caenorhabditis elegans] 4.0E-63
blast CAE59677 Hypothetical protein CBG03100 [Caenorhabditis briggsae] 5.0E-62
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 5.0E-61
blast CAA88484 Hypothetical protein ZK673.10 [Caenorhabditis elegans] ref|NP_496250.1| ZK673.10 [Caenorhabditis elegans] 1.0E-59
blast CAA88983 Hypothetical protein ZK666.4 [Caenorhabditis elegans] ref|NP_496257.1| ZK666.4 [Caenorhabditis elegans] 6.0E-52
blast CAA88483 Hypothetical protein ZK673.5 [Caenorhabditis elegans] ref|NP_496248.1| ZK673.5 [Caenorhabditis elegans] sp|Q09664|YS55_CAEEL Hypothetical protein ZK673.5 in chromosome II 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0082
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.028
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.7E-8
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.7E-9
Sequence
Target Sequence 
>C. ELEGANS:172390_X_AT
ggagtactctcaaattccatccttcgcattctacaacaatgcttccatctttcaattctt
ccctcgaaacaagcgtctcaacactcatcagaaatcttgccttgatgagcatgctcgaaa
aatggctgttttcatgatggagaggcaagaagagtaccgttactacgagaacttggccaa
tcaggaacaattctccgatgatgcctgcttcagtgacactggaatggactccggattctg
cagtggagccacttcaactggacaatcagcttcaacttctcctgctccagcccatctcat
cccaaatccattttttgatccagaatatgttgccaaggctcaatctccagtgaaactcgt
tgccaatccattctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTACTCTCAAATTCCATCCTTC 596 517 15 Antisense
TCTACAACAATGCTTCCATCTTTCA 157 613 44 Antisense
ATCTTTCAATTCTTCCCTCGAAACA 378 31 61 Antisense
CGAAACAAGCGTCTCAACACTCATC 410 251 79 Antisense
AACAATTCTCCGATGATGCCTGCTT 171 135 200 Antisense
TGATGCCTGCTTCAGTGACACTGGA 204 567 213 Antisense
AATGGACTCCGGATTCTGCAGTGGA 389 161 237 Antisense
GTGGAGCCACTTCAACTGGACAATC 141 491 257 Antisense
TGGACAATCAGCTTCAACTTCTCCT 518 547 273 Antisense
ATGTTGCCAAGGCTCAATCTCCAGT 441 47 341 Antisense
GAAACTCGTTGCCAATCCATTCTAC 144 357 366 Antisense
Sequence Source Affymetrix Proprietary Database