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[172389_x_at]

Description Y43D4A.3 /REP_DB=WormBase Gene ID /WP=CE21876 /TR=Q9NF28 /GB=CAB60344.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 84.4
(1.1)
P
15.3
(-3)
A
40.9
(-1.5)
A
117.3
(3)
A
102
B 52.1
(-1.1)
A
43.9
(-2.2)
A
37.9
(-3)
A
82
(3)
P
44
C 40.9
(-3)
A
103.8
(-0.3)
A
47.9
(-2.7)
A
178.2
(3)
P
137
avr 59.1
(-1.8)
54.3
(-2.1)
42.2
(-3)
125.8
(3)
84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 77
(-1.7)
A
34.3
(-3)
A
92.7
(-1.2)
P
58.8
(-2.2)
A
226.3
(3)
P
205
(2.3)
P
192
B 68
(-1.6)
P
60.3
(-1.9)
A
31.9
(-3)
A
61.9
(-1.8)
P
183
(3)
P
152.7
(1.8)
P
151
C 51
(-2.1)
A
76.4
(-0.7)
P
34.2
(-3)
A
56.1
(-1.8)
A
122.8
(1.8)
P
145
(3)
P
111
avr 65.3
(-2.4)
57
(-2.8)
52.9
(-3)
58.9
(-2.7)
177.4
(3)
167.6
(2.5)
125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.7
(3)
P
3.3
(-3)
A
10.7
(-1.4)
A
17.2
(0)
A
27
B 16.6
(2.4)
A
10.8
(-1.6)
A
8.8
(-3)
A
17.5
(3)
P
9
C 13.5
(-3)
A
29.9
(2.9)
A
16.7
(-1.8)
A
30.1
(3)
P
17
avr 20.3
(2.2)
14.7
(-1.4)
12.1
(-3)
21.6
(3)
10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 14.2
(-2.8)
A
12.2
(-3)
A
20.2
(-2.1)
P
14.9
(-2.7)
A
68.3
(3)
P
49.9
(1)
P
56
B 23.7
(-1.6)
P
20.1
(-1.9)
A
7.7
(-3)
A
16.4
(-2.2)
P
74.4
(3)
P
57
(1.4)
P
67
C 18.9
(-1.5)
A
23.3
(-0.8)
P
8.7
(-3)
A
11.3
(-2.6)
A
39.7
(1.7)
P
48.5
(3)
P
40
avr 18.9
(-2.2)
18.5
(-2.2)
12.2
(-3)
14.2
(-2.8)
60.8
(3)
51.8
(1.9)
49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172389_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9362
Sequence Type Exemplar sequence
Representative Public ID Y43D4A.3 NCBI
Target Description Y43D4A.3 /REP_DB=WormBase Gene ID /WP=CE21876 /TR=Q9NF28 /GB=CAB60344.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070585(11), NM_070586(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_070585 NCBI Caenorhabditis elegans Y43D4A.3 (Y43D4A.3) mRNA, complete cds. 11/11 A 
NM_070586 NCBI Caenorhabditis elegans Y43D4A.4 (Y43D4A.4) mRNA, complete cds. 10/11 A 
SNAP00000037218 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16765652:16770018:1 10/11 None
SNAP00000037219 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16766284:16768279:-1 10/11 None
GENEFINDER00000037222 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16766729:16768279:-1 11/11 None
GENEFINDER00000037227 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16768481:16770035:1 10/11 None
Y43D4A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16766729:16768279:-1 gene:Y43D4A.3 11/11 A 
Y43D4A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16768481:16770035:1 gene:Y43D4A.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073642 8/11 Cross Hyb Matching Probes A 
C27A7.6 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16768455-16769579(+) 84.55 84.55
chrIV:16766734-16768285(-) 100.0 100.0
chrV:12128344-12129898(-) 99.29 99.29
Public Domain and Genome References
Gene Title

Ensembl Y43D4A.3
Y43D4A.4
Entrez Gene 189852 Entrez gene
189853 Entrez gene
SwissProt Q9NF28 EMBL-EBI
Q9NF27 EMBL-EBI
WormBase CE21876 Wormbase
CE21877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60344 Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] 1.0E-165
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 1.0E-146
blast CAB60344 Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] 1.0E-143
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 1.0E-137
blast CAB60345 Hypothetical protein Y43D4A.4 [Caenorhabditis elegans] ref|NP_502987.1| Y43D4A.4 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502986.1 6 37-59,74-96,142-164,174-196,227-249,264-286
NP_502987.1 6 13-35,45-67,80-102,112-134,166-188,203-225
Y43D4A.3 6 37-59,74-96,142-164,174-196,227-249,264-286
Y43D4A.4 6 13-35,45-67,80-102,112-134,166-188,203-225
SNAP00000037218 6 59-81,91-108,128-150,160-182,213-235,250-272
SNAP00000037219 6 37-59,74-96,142-164,174-196,227-249,264-286
GENEFINDER00000037222 6 37-59,74-96,142-164,174-196,227-249,264-286
GENEFINDER00000037227 6 13-35,45-67,80-102,112-134,166-188,203-225
Sequence
Target Sequence
>C. ELEGANS:172389_X_AT
gaatgctggttccctggtgatcagagagcaattgcaaatgtactttcttttgttgcaaat
cctgccggtgttgccctgggaacaattgtgccatccattctttttggtcacaataagact
attgattcgaatagttggatgttcttcacatttactcttggaatggaatgtctagccttg
tttccatttgttctagcactattcgttcgaactaaactgccacccactccaccatcagct
tcttctgctgctcatcagaacaacattggtttctttaaatctatccttcaatgtattttt
aatgctcaatttttcatccaaatgactctctttgcatttgcgttttcgcttctgtggagt
ctaatgatttttctcgatggtccactcaaagatcaaggttatgagatggctggatatcca
actgccgtgtgtgcaatcgttggcacgttaacatcactgctcgctggtcatattgccgac
aaaacacgcaagttcaagagtttgcactgttggattttcatgttcagtcattacattgag
aatggtgagttaaaattcttctaccaggg


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAATGCTGGTTCCCTGGTGATCAGA 346 331 397 Antisense
TGTTGCAAATCCTGCCGGTGTTGCC 529 557 447 Antisense
GTGCCATCCATTCTTTTTGGTCACA 567 477 484 Antisense
TCTAGCCTTGTTTCCATTTGTTCTA 245 615 567 Antisense
GACTCTCTTTGCATTTGCGTTTTCG 635 373 720 Antisense
CGTTTTCGCTTCTGTGGAGTCTAAT 189 247 737 Antisense
AATGATTTTTCTCGATGGTCCACTC 29 165 759 Antisense
GGATATCCAACTGCCGTGTGTGCAA 707 509 808 Antisense
TTGGCACGTTAACATCACTGCTCGC 273 705 836 Antisense
TGCTCGCTGGTCATATTGCCGACAA 549 581 854 Antisense
GTGAGTTAAAATTCTTCTACCAGGG 220 481 941 Antisense
Sequence Source Affymetrix Proprietary Database