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Cluster Members Consensus/Exemplar Group Members |
GeneChip Array Information |
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172389_x_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.9362
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Exemplar sequence
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Y43D4A.3 NCBI
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Y43D4A.3 /REP_DB=WormBase Gene ID /WP=CE21876 /TR=Q9NF28 /GB=CAB60344.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
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Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_070585(11), NM_070586(10) |
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NM_070585 NCBI |
Caenorhabditis elegans Y43D4A.3 (Y43D4A.3) mRNA, complete cds. |
11/11 |
A |
NM_070586 NCBI |
Caenorhabditis elegans Y43D4A.4 (Y43D4A.4) mRNA, complete cds. |
10/11 |
A |
SNAP00000037218 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:16765652:16770018:1 |
10/11 |
None |
SNAP00000037219 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:16766284:16768279:-1 |
10/11 |
None |
GENEFINDER00000037222 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:16766729:16768279:-1 |
11/11 |
None |
GENEFINDER00000037227 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:16768481:16770035:1 |
10/11 |
None |
Y43D4A.3 ENSEMBL |
cdna:known chromosome:CEL140:IV:16766729:16768279:-1 gene:Y43D4A.3 |
11/11 |
A |
Y43D4A.4 ENSEMBL |
cdna:known chromosome:CEL140:IV:16768481:16770035:1 gene:Y43D4A.4 |
10/11 |
A | |
NM_073642 |
8/11 |
Cross Hyb Matching Probes |
A |
C27A7.6 |
8/11 |
Cross Hyb Matching Probes |
A | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrIV:16768455-16769579(+) |
84.55 |
84.55 |
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chrIV:16766734-16768285(-) |
100.0 |
100.0 |
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chrV:12128344-12129898(-) |
99.29 |
99.29 |
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Public Domain and Genome References |
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Y43D4A.3 Y43D4A.4
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189852 Entrez gene 189853 Entrez gene
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Q9NF28 EMBL-EBI Q9NF27 EMBL-EBI
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CE21876 Wormbase CE21877 Wormbase
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Functional Annotations |
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blast |
CAB60344 |
Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] |
1.0E-165 |
blast |
CAB07317 |
Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] |
1.0E-146 |
blast |
CAB60344 |
Hypothetical protein Y43D4A.3 [Caenorhabditis elegans] ref|NP_502986.1| Y43D4A.3 [Caenorhabditis elegans] |
1.0E-143 |
blast |
CAB07317 |
Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] |
1.0E-137 |
blast |
CAB60345 |
Hypothetical protein Y43D4A.4 [Caenorhabditis elegans] ref|NP_502987.1| Y43D4A.4 [Caenorhabditis elegans] |
1.0E-128 | |
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NP_502986.1 |
6 |
37-59,74-96,142-164,174-196,227-249,264-286 |
NP_502987.1 |
6 |
13-35,45-67,80-102,112-134,166-188,203-225 |
Y43D4A.3 |
6 |
37-59,74-96,142-164,174-196,227-249,264-286 |
Y43D4A.4 |
6 |
13-35,45-67,80-102,112-134,166-188,203-225 |
SNAP00000037218 |
6 |
59-81,91-108,128-150,160-182,213-235,250-272 |
SNAP00000037219 |
6 |
37-59,74-96,142-164,174-196,227-249,264-286 |
GENEFINDER00000037222 |
6 |
37-59,74-96,142-164,174-196,227-249,264-286 |
GENEFINDER00000037227 |
6 |
13-35,45-67,80-102,112-134,166-188,203-225 | |
Sequence |
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>C. ELEGANS:172389_X_AT
gaatgctggttccctggtgatcagagagcaattgcaaatgtactttcttttgttgcaaat
cctgccggtgttgccctgggaacaattgtgccatccattctttttggtcacaataagact
attgattcgaatagttggatgttcttcacatttactcttggaatggaatgtctagccttg
tttccatttgttctagcactattcgttcgaactaaactgccacccactccaccatcagct
tcttctgctgctcatcagaacaacattggtttctttaaatctatccttcaatgtattttt
aatgctcaatttttcatccaaatgactctctttgcatttgcgttttcgcttctgtggagt
ctaatgatttttctcgatggtccactcaaagatcaaggttatgagatggctggatatcca
actgccgtgtgtgcaatcgttggcacgttaacatcactgctcgctggtcatattgccgac
aaaacacgcaagttcaagagtttgcactgttggattttcatgttcagtcattacattgag
aatggtgagttaaaattcttctaccaggg
BLASTn GenBank NR |
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GAATGCTGGTTCCCTGGTGATCAGA |
346 |
331 |
397 |
Antisense |
TGTTGCAAATCCTGCCGGTGTTGCC |
529 |
557 |
447 |
Antisense |
GTGCCATCCATTCTTTTTGGTCACA |
567 |
477 |
484 |
Antisense |
TCTAGCCTTGTTTCCATTTGTTCTA |
245 |
615 |
567 |
Antisense |
GACTCTCTTTGCATTTGCGTTTTCG |
635 |
373 |
720 |
Antisense |
CGTTTTCGCTTCTGTGGAGTCTAAT |
189 |
247 |
737 |
Antisense |
AATGATTTTTCTCGATGGTCCACTC |
29 |
165 |
759 |
Antisense |
GGATATCCAACTGCCGTGTGTGCAA |
707 |
509 |
808 |
Antisense |
TTGGCACGTTAACATCACTGCTCGC |
273 |
705 |
836 |
Antisense |
TGCTCGCTGGTCATATTGCCGACAA |
549 |
581 |
854 |
Antisense |
GTGAGTTAAAATTCTTCTACCAGGG |
220 |
481 |
941 |
Antisense | |
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Affymetrix Proprietary Database |