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[172387_x_at]

Description M01D1.5 /REP_DB=WormBase Gene ID /WP=CE12250 /TR=O17226 /GB=AAB70995.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 33      6grp_total > 21      4grp_total > 03      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14954
1 2 3 4 range
A 2246.5
(-2.4)
P 		718.5
(-3)
P 		838
(-3)
P 		15534.8
(3)
P 		14816
B 3341.2
(0.4)
P 		1345.2
(-2.6)
P 		1083.9
(-3)
P 		5095.6
(3)
P 		4012
C 3377
(-1.8)
P 		779.4
(-2.9)
P 		580.9
(-3)
P 		14968.3
(3)
P 		14387
avr 2988.2
(-1.8) 		947.7
(-2.9) 		834.3
(-3) 		11866.2
(3) 		11032

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6140
1 2 3 4 5 6 range
A 874.1
(-2.4)
P 		1026
(-2.2)
P 		6265.1
(3)
P 		331.9
(-2.9)
P 		1999.9
(-1.3)
P 		271.7
(-3)
P 		5993
B 2320.4
(0.8)
P 		3285.2
(3)
P 		2315.7
(0.8)
P 		822.5
(-2.6)
P 		1016.4
(-2.2)
P 		643.3
(-3)
P 		2642
C 705.8
(-2.5)
P 		6317.6
(3)
P 		402.5
(-2.8)
P 		977.9
(-2.2)
P 		177.5
(-3)
P 		809.4
(-2.4)
P 		6140
avr 1300.1
(-1.5) 		3542.9
(3) 		2994.4
(1.9) 		710.8
(-2.7) 		1064.6
(-2) 		574.8
(-3) 		2968
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2368
1 2 3 4 range
A 818
(-1.1)
P 		156
(-3)
P 		219.1
(-2.8)
P 		2274
(3)
P 		2118
B 1065.5
(2.9)
P 		332.2
(-2.4)
P 		251.2
(-3)
P 		1085.9
(3)
P 		835
C 1117.9
(-0.6)
P 		224.1
(-2.9)
P 		202.4
(-3)
P 		2523.9
(3)
P 		2322
avr 1000.5
(-0.3) 		237.4
(-3) 		224.2
(-3) 		1961.3
(3) 		1737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1870
1 2 3 4 5 6 range
A 161.1
(-2.6)
P 		364.9
(-1.6)
P 		1364.4
(3)
P 		84.2
(-2.9)
P 		603.5
(-0.5)
P 		66.1
(-3)
P 		1298
B 807.4
(1)
P 		1093.5
(3)
P 		562.3
(-0.6)
P 		217.9
(-3)
P 		412.9
(-1.7)
P 		239.9
(-2.8)
P 		876
C 261.6
(-2.3)
P 		1927.7
(3)
P 		102.4
(-2.9)
P 		196.7
(-2.6)
P 		57.4
(-3)
P 		270.9
(-2.3)
P 		1870
avr 410
(-1.5) 		1128.7
(3) 		676.4
(0.2) 		166.3
(-3) 		357.9
(-1.8) 		192.3
(-2.8) 		962
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172387_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5669
Sequence Type Exemplar sequence
Representative Public ID M01D1.5 NCBI
Target Description M01D1.5 /REP_DB=WormBase Gene ID /WP=CE12250 /TR=O17226 /GB=AAB70995.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029285 ENSEMBL cdna:SNAP chromosome:CEL140:II:1034330:1036468:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NR_002374 1/11 Cross Hyb Matching Probes None
SNAP00000010958 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035816 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029150 1/11 Cross Hyb Matching Probes None
SNAP00000003365 1/11 Cross Hyb Matching Probes None
SNAP00000017447 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 1/11 Cross Hyb Matching Probes None
SNAP00000029286 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 6/11 Cross Hyb Matching Probes None
SNAP00000042947 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 1/11 Cross Hyb Matching Probes None
SNAP00000041767 2/11 Cross Hyb Matching Probes None
SNAP00000039716 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039724 1/11 Cross Hyb Matching Probes None
GENEFINDER00000027280 1/11 Cross Hyb Matching Probes None
SNAP00000031960 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031976 1/11 Cross Hyb Matching Probes None
SNAP00000031963 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031978 1/11 Cross Hyb Matching Probes None
SNAP00000001610 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001634 1/11 Cross Hyb Matching Probes None
GENEFINDER00000008425 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026632 1/11 Cross Hyb Matching Probes None
SNAP00000030920 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030940 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033793 1/11 Cross Hyb Matching Probes None
SNAP00000037535 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 1/11 Cross Hyb Matching Probes None
GENEFINDER00000010041 1/11 Cross Hyb Matching Probes None
SNAP00000022903 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022909 1/11 Cross Hyb Matching Probes None
SNAP00000028756 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028763 1/11 Cross Hyb Matching Probes None
SNAP00000031107 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031114 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015658 1/11 Cross Hyb Matching Probes None
SNAP00000006574 1/11 Cross Hyb Matching Probes None
SNAP00000025925 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025928 1/11 Cross Hyb Matching Probes None
SNAP00000032397 1/11 Cross Hyb Matching Probes None
GENEFINDER00000032410 1/11 Cross Hyb Matching Probes None
GENEFINDER00000017316 1/11 Cross Hyb Matching Probes None
SNAP00000032586 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032588 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88035 protein M01D1.5 [imported] - Caenorhabditis elegans 2.0E-13
blast T29578 hypothetical protein M03A1.5 - Caenorhabditis elegans 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.5
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 34.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 11.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 5.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 7.4
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 22.0
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 26.0
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.0E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.7E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.8E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.5E-10
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.2E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.2E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.0E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.7E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.3E-8
Sequence
Target Sequence 
>C. ELEGANS:172387_X_AT
gtctcaccacgaagggtttcaccacgaagggtctcaccacgatgggtctcgccacgatgg
gtctcaccacgaagggtctcaccacgatgggtctcaccacgaagggtttcatcacgaagg
gtctcaacatgatgggtctcgccacgatgggtctcaccacgatgggtctcaccacgaagg
gtctcaccacgaagggtctcaccacgaagggtctcaccacgaagggtctcaccacgatgg
gtctcaccacgatgggtctcaccacgatgggtctcacaacgatgggtctcacaacgatgg
gtctcactacgatgggtctcaccacgatgggactcaccacgatgggtctcaccacgaagg
gtctcaccacgatggatctcaccacgatgggtctcaccacgatgggcctgaccacgaagg
gccctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCACCACGAAGGGTTTCACCAC 544 469 1607 Antisense
TGGGTCTCACCACGAAGGGTTTCAT 571 553 1694 Antisense
GGGTTTCATCACGAAGGGTCTCAAC 432 497 1710 Antisense
GTCTCAACATGATGGGTCTCGCCAC 335 469 1727 Antisense
GTCTCACAACGATGGGTCTCACAAC 120 471 1877 Antisense
CACAACGATGGGTCTCACTACGATG 659 193 1896 Antisense
CACTACGATGGGTCTCACCACGATG 362 197 1911 Antisense
ACCACGATGGGACTCACCACGATGG 678 85 1927 Antisense
CCACGAAGGGTCTCACCACGATGGA 208 275 1958 Antisense
CCACGATGGATCTCACCACGATGGG 623 273 1973 Antisense
TGGGCCTGACCACGAAGGGCCCTAC 242 543 2009 Antisense
Sequence Source Affymetrix Proprietary Database