[Home] | [Total List]

[172386_x_at]

Description B0213.5 /REP_DB=WormBase Gene ID /WP=CE16776 /TR=O44663 /GB=AAC47928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 58      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 744
1 2 3 4 range
A 327.4
(-1.7)
P 		660
(2.1)
P 		736.9
(3)
P 		209.6
(-3)
P 		527
B 392.1
(-1.4)
P 		899.4
(3)
P 		776.4
(1.9)
P 		210.6
(-3)
P 		689
C 371.2
(-1.3)
P 		909.1
(3)
P 		898.3
(2.9)
P 		165.5
(-3)
P 		744
avr 363.6
(-1.4) 		822.8
(3) 		803.9
(2.8) 		195.2
(-3) 		628

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1356
1 2 3 4 5 6 range
A 1058.3
(3)
P 		820.7
(0.8)
P 		694.5
(-0.3)
P 		531.8
(-1.8)
P 		400.9
(-3)
P 		799.4
(0.6)
P 		657
B 1320.4
(3)
P 		831.2
(0.1)
P 		779.4
(-0.2)
P 		311.7
(-3)
P 		509.4
(-1.8)
P 		789
(-0.2)
P 		1009
C 1667.7
(3)
P 		766.8
(-1.4)
P 		575.6
(-2.3)
P 		434.1
(-3)
P 		539.6
(-2.5)
P 		816.9
(-1.1)
P 		1234
avr 1348.8
(3) 		806.2
(-0.5) 		683.2
(-1.3) 		425.9
(-3) 		483.3
(-2.6) 		801.8
(-0.6) 		923
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 119.2
(0.3)
P 		143.3
(1.2)
P 		192.6
(3)
P 		30.7
(-3)
P 		162
B 125
(-0.3)
P 		222.1
(3)
P 		179.9
(1.6)
P 		44.9
(-3)
P 		177
C 122.9
(-1)
P 		261.4
(1.9)
P 		313.1
(3)
P 		27.9
(-3)
P 		285
avr 122.4
(-0.3) 		208.9
(2.4) 		228.5
(3) 		34.5
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 195.1
(-0.4)
P 		291.9
(3)
P 		151.3
(-1.9)
P 		134.9
(-2.5)
P 		121
(-3)
P 		194.6
(-0.4)
P 		171
B 459.4
(3)
P 		276.7
(0.1)
P 		189.3
(-1.3)
P 		82.6
(-3)
P 		207
(-1)
P 		294.2
(0.4)
P 		377
C 618.1
(3)
P 		234
(-1.3)
P 		146.5
(-2.3)
P 		87.3
(-3)
P 		174.6
(-2)
P 		273.5
(-0.9)
P 		531
avr 424.2
(3) 		267.5
(0.1) 		162.4
(-1.9) 		101.6
(-3) 		167.5
(-1.8) 		254.1
(-0.2) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172386_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15614
Sequence Type Exemplar sequence
Representative Public ID B0213.5 NCBI
Target Description B0213.5 /REP_DB=WormBase Gene ID /WP=CE16776 /TR=O44663 /GB=AAC47928.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071707 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-30) (nlp-30) mRNA, complete cds. 11/11 None
SNAP00000025860 ENSEMBL cdna:SNAP chromosome:CEL140:V:3982195:3982452:1 11/11 None
GENEFINDER00000025869 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3982195:3982452:1 11/11 None
B0213.5 ENSEMBL cdna:known chromosome:CEL140:V:3981793:3982559:1 gene:B0213.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071709 1/11 Cross Hyb Matching Probes A 
NM_071706 1/11 Cross Hyb Matching Probes A 
NM_071708 1/11 Cross Hyb Matching Probes None
SNAP00000025859 1/11 Cross Hyb Matching Probes None
SNAP00000025862 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025870 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025875 1/11 Cross Hyb Matching Probes None
B0213.6 1/11 Cross Hyb Matching Probes A 
B0213.4 1/11 Cross Hyb Matching Probes A 
B0213.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3982194-3982452(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-30
Ensembl B0213.5
Entrez Gene 3565444 Entrez gene
SwissProt O44663 EMBL-EBI
WormBase CE16776 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504108.1 1 7-29
B0213.5 1 7-29
SNAP00000025860 1 7-29
GENEFINDER00000025869 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172386_X_AT
atgatttcaacttcttcaattctgattctcgttgttcttctcgcctgcttcatggctgcc
agcgcccaatggggatatggaggatatggaagaggatatggtggatacggtggatatggt
agaggttatggtggatatggacgcggatatggaggttatggacgtggaatgtggggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTTCAACTTCTTCAATTCTGA 239 47 13 Antisense
AACTTCTTCAATTCTGATTCTCGTT 516 139 21 Antisense
CAATTCTGATTCTCGTTGTTCTTCT 540 179 29 Antisense
GCTGCCAGCGCCCAATGGGGATATG 136 297 67 Antisense
AGCGCCCAATGGGGATATGGAGGAT 474 79 73 Antisense
GAGGATATGGTGGATACGGTGGATA 416 403 104 Antisense
GGTGGATACGGTGGATATGGTAGAG 645 499 112 Antisense
GGTGGATATGGTAGAGGTTATGGTG 608 499 121 Antisense
GGTTATGGTGGATATGGACGCGGAT 251 505 136 Antisense
GGACGCGGATATGGAGGTTATGGAC 176 523 151 Antisense
GGTTATGGACGTGGAATGTGGGGAC 524 505 166 Antisense
Sequence Source Affymetrix Proprietary Database