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[172385_x_at]

Description F41G3.1 /REP_DB=WormBase Gene ID /WP=CE01282 /TR=Q20295 /GB=AAA81113.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 57      6grp_total > 10      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7129
1 2 3 4 range
A 2146.9
(-2.1)
P 		1272.1
(-2.8)
P 		1082.7
(-3)
P 		8169.9
(3)
P 		7087
B 2136.1
(-2)
P 		1114.3
(-3)
P 		1360
(-2.8)
P 		7155.7
(3)
P 		6041
C 2244
(-2)
P 		1391.5
(-2.7)
P 		1071
(-3)
P 		8200.1
(3)
P 		7129
avr 2175.7
(-2.1) 		1259.3
(-2.9) 		1171.2
(-3) 		7841.9
(3) 		6671

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2479
1 2 3 4 5 6 range
A 1587
(-3)
P 		2492.2
(-0.8)
P 		4065.7
(3)
P 		2647.4
(-0.4)
P 		2018.3
(-2)
P 		1882.5
(-2.3)
P 		2479
B 1783.8
(-3)
P 		2999.6
(3)
P 		2764.1
(1.8)
P 		2604
(1)
P 		2466.7
(0.4)
P 		2343.5
(-0.2)
P 		1216
C 2054.3
(-1.8)
P 		2834.9
(2.5)
P 		1848.1
(-3)
P 		1840.4
(-3)
P 		2046.7
(-1.9)
P 		2920.9
(3)
P 		1081
avr 1808.4
(-3) 		2775.6
(2.4) 		2892.6
(3) 		2363.9
(0.1) 		2177.2
(-1) 		2382.3
(0.2) 		1084
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1250
1 2 3 4 range
A 781.7
(0.3)
P 		276.1
(-3)
P 		283
(-3)
P 		1195.9
(3)
P 		920
B 681.2
(-1.1)
P 		275.2
(-3)
P 		315.1
(-2.8)
P 		1524.9
(3)
P 		1250
C 742.8
(-0.8)
P 		400.1
(-2.8)
P 		373.3
(-3)
P 		1382.7
(3)
P 		1009
avr 735.2
(-0.6) 		317.1
(-3) 		323.8
(-3) 		1367.8
(3) 		1051

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 710
1 2 3 4 5 6 range
A 292.6
(-3)
P 		886.4
(3)
P 		885.4
(3)
P 		671.4
(0.8)
P 		609
(0.2)
P 		458.3
(-1.3)
P 		594
B 620.7
(-3)
P 		998.4
(2.9)
P 		671.2
(-2.2)
P 		689.7
(-1.9)
P 		1002.2
(3)
P 		873.9
(1)
P 		382
C 761.4
(0.9)
P 		865
(1.9)
P 		470.4
(-2)
P 		370.1
(-3)
P 		662.3
(-0.1)
P 		977.8
(3)
P 		608
avr 558.2
(-3) 		916.6
(3) 		675.7
(-1) 		577.1
(-2.7) 		757.8
(0.3) 		770
(0.5) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172385_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5159
Sequence Type Exemplar sequence
Representative Public ID F41G3.1 NCBI
Target Description F41G3.1 /REP_DB=WormBase Gene ID /WP=CE01282 /TR=Q20295 /GB=AAA81113.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062984 NCBI Caenorhabditis elegans F41G3.1 (F41G3.1) mRNA, complete cds. 11/11 None
F41G3.1.2 ENSEMBL cdna:known chromosome:CEL140:II:6764972:6765791:1 gene:F41G3.1 11/11 None
F41G3.1.1 ENSEMBL cdna:known chromosome:CEL140:II:6765013:6765820:1 gene:F41G3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017951 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6765021-6765680(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G3.1
Entrez Gene 174115 Entrez gene
SwissProt Q20295 EMBL-EBI
WormBase CE01282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81113 Hypothetical protein F41G3.1 [Caenorhabditis elegans] ref|NP_495385.1| F41G3.1 [Caenorhabditis elegans] 2.0E-36
blast CAE65965 Hypothetical protein CBG11148 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495385.1 1 2-21
F41G3.1.2 1 2-21
F41G3.1.1 1 2-21
Sequence
Target Sequence 
>C. ELEGANS:172385_X_AT
tcttcttgctgtctcttatggatttatgtacgaaatggaggattcgtacccagtttctgg
agaattgccaaagagaagtttggagaacttttggaggaacattcacttgcaaatgccatc
aggacgtggaggacaaaagaggacagaaggattgagcagagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTTGCTGTCTCTTATGGATTT 375 617 45 Antisense
GCTGTCTCTTATGGATTTATGTACG 555 295 52 Antisense
GAAATGGAGGATTCGTACCCAGTTT 361 361 76 Antisense
GGATTCGTACCCAGTTTCTGGAGAA 198 509 84 Antisense
GTACCCAGTTTCTGGAGAATTGCCA 347 457 90 Antisense
GGAGAACTTTTGGAGGAACATTCAC 462 519 126 Antisense
GGAACATTCACTTGCAAATGCCATC 512 529 140 Antisense
ATTCACTTGCAAATGCCATCAGGAC 691 9 145 Antisense
ACTTGCAAATGCCATCAGGACGTGG 477 103 149 Antisense
AATGCCATCAGGACGTGGAGGACAA 99 167 156 Antisense
GAGGACAGAAGGATTGAGCAGAGCC 61 405 183 Antisense
Sequence Source Affymetrix Proprietary Database