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[172384_x_at]

Description R05G6.3 /REP_DB=WormBase Gene ID /WP=CE07416 /TR=Q21757 /GB=AAB00627.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 44
(-1.9)
A 		44
(-1.9)
A 		40.3
(-3)
A 		59.9
(3)
A 		20
B 35.9
(-2)
A 		33.9
(-2.6)
A 		51.2
(3)
P 		32.7
(-3)
A 		19
C 16.5
(-3)
A 		46.4
(-0.5)
P 		27
(-2.1)
A 		88.9
(3)
P 		72
avr 32.1
(-3) 		41.4
(-1) 		39.5
(-1.4) 		60.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 26
(0.3)
A 		37.6
(2)
A 		44.3
(3)
A 		4
(-3)
A 		22.9
(-0.2)
A 		28
(0.6)
A 		40
B 30.5
(-0.1)
A 		44.1
(3)
A 		31.2
(0.1)
A 		27.7
(-0.7)
A 		39.2
(1.9)
A 		17.4
(-3)
A 		27
C 17.2
(-1.4)
A 		46.9
(3)
P 		32.8
(0.9)
A 		46.2
(2.9)
A 		6.3
(-3)
A 		22.8
(-0.6)
A 		41
avr 24.6
(-2.4) 		42.9
(3) 		36.1
(1) 		26
(-2) 		22.8
(-3) 		22.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 16
(3)
A 		9.6
(-2.3)
A 		10.5
(-1.6)
A 		8.8
(-3)
A 		7
B 11.5
(2.5)
A 		8.4
(-1.3)
A 		11.9
(3)
P 		7
(-3)
A 		5
C 5.5
(-3)
A 		13.4
(2)
P 		9.4
(-0.5)
A 		15
(3)
P 		10
avr 11
(3) 		10.5
(-1.3) 		10.6
(-0.4) 		10.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.8
(-1.2)
A 		13.4
(3)
A 		9.6
(1.2)
A 		1
(-3)
A 		6.9
(-0.1)
A 		6.8
(-0.2)
A 		12
B 10.6
(-0.4)
A 		14.7
(2.2)
A 		7.6
(-2.3)
A 		7.3
(-2.5)
A 		15.9
(3)
A 		6.5
(-3)
A 		9
C 6.4
(-0.9)
A 		14.3
(3)
P 		8.3
(0.1)
A 		9.3
(0.6)
A 		2
(-3)
A 		7.6
(-0.3)
A 		12
avr 7.3
(-2) 		14.1
(3) 		8.5
(-1.1) 		5.9
(-3) 		8.3
(-1.2) 		7
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172384_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9777
Sequence Type Exemplar sequence
Representative Public ID R05G6.3 NCBI
Target Description R05G6.3 /REP_DB=WormBase Gene ID /WP=CE07416 /TR=Q21757 /GB=AAB00627.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000020440 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7516569:7517019:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7516574-7517025(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29360 hypothetical protein R05G6.3 - Caenorhabditis elegans 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020440 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:172384_X_AT
aaatctttattgttttcgttgtcattttgagcttcttcttggtgccaaccctggctgctc
gcactcgttatcgtcacaaggtgtcattcagtgctcatgacaatgctgattctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTTTATTGTTTTCGTTGTCAT 334 117 17 Antisense
TTTCGTTGTCATTTTGAGCTTCTTC 367 671 30 Antisense
TTGTCATTTTGAGCTTCTTCTTGGT 574 705 35 Antisense
CATTTTGAGCTTCTTCTTGGTGCCA 291 215 39 Antisense
TTTTGAGCTTCTTCTTGGTGCCAAC 456 677 41 Antisense
TCGCACTCGTTATCGTCACAAGGTG 7 601 75 Antisense
GCACTCGTTATCGTCACAAGGTGTC 49 317 77 Antisense
GTCACAAGGTGTCATTCAGTGCTCA 631 463 89 Antisense
ACAAGGTGTCATTCAGTGCTCATGA 225 113 92 Antisense
CAGTGCTCATGACAATGCTGATTCT 198 207 105 Antisense
TGCTCATGACAATGCTGATTCTGGA 643 579 108 Antisense
Sequence Source Affymetrix Proprietary Database