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[172383_x_at]

Description F07G6.3 /REP_DB=WormBase Gene ID /WP=CE07036 /TR=Q19171 /GB=AAA96074.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 68.4
(0)
A 		43.6
(-1.3)
A 		12.3
(-3)
A 		123.6
(3)
A 		111
B 40.8
(-3)
A 		66
(0.2)
A 		45.7
(-2.4)
A 		88.5
(3)
A 		48
C 23.1
(-2.2)
A 		48.6
(-0.9)
A 		6.5
(-3)
A 		129.2
(3)
P 		123
avr 44.1
(-1.5) 		52.7
(-1) 		21.5
(-3) 		113.8
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 9.9
(-2.7)
A 		22.7
(-0.3)
A 		36.6
(2.3)
A 		8.3
(-3)
A 		40.3
(3)
A 		24.8
(0.1)
A 		32
B 57.8
(2.6)
A 		61.7
(3)
A 		34
(0.1)
A 		4.2
(-3)
A 		34.5
(0.2)
A 		44.3
(1.2)
A 		58
C 9
(-2.6)
A 		73.7
(3)
A 		22.7
(-1.4)
A 		4.1
(-3)
A 		4.7
(-2.9)
A 		41.9
(0.3)
A 		70
avr 25.6
(-0.4) 		52.7
(3) 		31.1
(0.3) 		5.5
(-3) 		26.5
(-0.3) 		37
(1) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.9
(3)
A 		9.5
(-1.3)
A 		3.2
(-3)
A 		18.1
(1.1)
A 		22
B 13
(-1.3)
A 		16.3
(1.1)
A 		10.6
(-3)
A 		18.9
(3)
A 		8
C 7.7
(-1.3)
A 		14
(0.6)
A 		2.3
(-3)
A 		21.8
(3)
P 		20
avr 15.2
(1.1) 		13.3
(0.3) 		5.4
(-3) 		19.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.8
(-3)
A 		8.1
(0.6)
A 		8
(0.6)
A 		2.1
(-2.8)
A 		12.2
(3)
A 		6
(-0.6)
A 		10
B 20.1
(2.9)
A 		20.5
(3)
A 		8.2
(-0.8)
A 		1.1
(-3)
A 		14
(1)
A 		16.5
(1.8)
A 		19
C 3.3
(-2.3)
A 		22.5
(3)
A 		5.8
(-1.6)
A 		0.8
(-3)
A 		1.5
(-2.8)
A 		14
(0.6)
A 		22
avr 8.4
(-0.3) 		17
(3) 		7.3
(-0.7) 		1.3
(-3) 		9.2
(0) 		12.2
(1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172383_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18619
Sequence Type Exemplar sequence
Representative Public ID F07G6.3 NCBI
Target Description F07G6.3 /REP_DB=WormBase Gene ID /WP=CE07036 /TR=Q19171 /GB=AAA96074.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075916 NCBI Caenorhabditis elegans F07G6.3 (F07G6.3) mRNA, complete cds. 11/11 None
SNAP00000009970 ENSEMBL cdna:SNAP chromosome:CEL140:X:1724143:1724883:1 11/11 None
GENEFINDER00000009990 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1724224:1724883:1 11/11 None
F07G6.3 ENSEMBL cdna:known chromosome:CEL140:X:1723087:1724883:1 gene:F07G6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074998 6/11 Cross Hyb Matching Probes A 
NM_075180 2/11 Cross Hyb Matching Probes A 
NM_067889 4/11 Cross Hyb Matching Probes A 
NM_076519 1/11 Cross Hyb Matching Probes A 
SNAP00000001616 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001632 4/11 Cross Hyb Matching Probes None
SNAP00000029066 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029070 6/11 Cross Hyb Matching Probes None
SNAP00000039472 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039486 2/11 Cross Hyb Matching Probes None
SNAP00000029103 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029109 3/11 Cross Hyb Matching Probes None
SNAP00000029104 1/11 Cross Hyb Matching Probes None
Y67D8C.2 4/11 Cross Hyb Matching Probes A 
Y20C6A.3 6/11 Cross Hyb Matching Probes A 
Y51A2A.5 2/11 Cross Hyb Matching Probes A 
C03F11.4.1 1/11 Cross Hyb Matching Probes A 
C03F11.4.2 1/11 Cross Hyb Matching Probes A 
C03F11.4.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1723086-1724883(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.3
Entrez Gene 184151 Entrez gene
SwissProt Q19171 EMBL-EBI
WormBase CE07036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508317 F07G6.3 [Caenorhabditis elegans] gb|AAA96074.1| Hypothetical protein F07G6.3 [Caenorhabditis elegans] 0.0
blast NP_508317 F07G6.3 [Caenorhabditis elegans] gb|AAA96074.1| Hypothetical protein F07G6.3 [Caenorhabditis elegans] 1.0E-141
blast NP_508317 F07G6.3 [Caenorhabditis elegans] gb|AAA96074.1| Hypothetical protein F07G6.3 [Caenorhabditis elegans] 1.0E-131
blast AAG23381 Hypothetical protein Y67D8C.2 [Caenorhabditis elegans] ref|NP_500290.1| Y67D8C.2 [Caenorhabditis elegans] 1.0E-127
blast AAG23381 Hypothetical protein Y67D8C.2 [Caenorhabditis elegans] ref|NP_500290.1| Y67D8C.2 [Caenorhabditis elegans] 1.0E-125
blast CAA16304 Hypothetical protein Y20C6A.3 [Caenorhabditis elegans] ref|NP_507399.1| Y20C6A.3 [Caenorhabditis elegans] 1.0E-120
blast AAG23381 Hypothetical protein Y67D8C.2 [Caenorhabditis elegans] ref|NP_500290.1| Y67D8C.2 [Caenorhabditis elegans] 1.0E-119
blast CAA16304 Hypothetical protein Y20C6A.3 [Caenorhabditis elegans] ref|NP_507399.1| Y20C6A.3 [Caenorhabditis elegans] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:172383_X_AT
cccccactgaactccaacattttggaaaattttcaaaattgcgaatctacgtctattgtt
acaattgaatgttccaaaactgattacgagactgaacatgagactcaaattattgattct
ccagatgctattcaaaaagaaaccacagcaattgagtcaattacaatccaggagaaatcc
tgtgacaatgaaaatgataagattgagcacattacgcacaactcattgaacaatcaggta
caaaagaccggactacaaaagccgggagatgtcgcctgtggcggattttttgacaagaaa
atgaagcgtagagtcaatgaggaaatgcgtccacgtacagatccaccaactgacttgtca
caacaagcatgctatggtacagtatctgatacgttggattggaataattggagtcatgag
aattggaaggatatgagttggcaaagattcgttcgagaatcacgtcctcgcaaggatcca
ccttggagttcgtgtcgttcggaagttggcgtttgttatggatggagatgggatgtcagt
caagttccatcttgctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCCACTGAACTCCAACATTTTGG 22 259 688 Antisense
TTGCGAATCTACGTCTATTGTTACA 118 687 726 Antisense
ATTGATTCTCCAGATGCTATTCAAA 231 5 799 Antisense
AGCACATTACGCACAACTCATTGAA 355 77 893 Antisense
CAAAAGCCGGGAGATGTCGCCTGTG 170 189 943 Antisense
GAAATGCGTCCACGTACAGATCCAC 424 361 1009 Antisense
ACAGATCCACCAACTGACTTGTCAC 399 107 1024 Antisense
GAGAATCACGTCCTCGCAAGGATCC 389 391 1142 Antisense
ATCCACCTTGGAGTTCGTGTCGTTC 170 41 1163 Antisense
CGGAAGTTGGCGTTTGTTATGGATG 571 241 1187 Antisense
GTCAGTCAAGTTCCATCTTGCTCTC 205 467 1222 Antisense
Sequence Source Affymetrix Proprietary Database