[Home] | [Total List]

[172382_x_at]

Description F07G6.5 /REP_DB=WormBase Gene ID /WP=CE07038 /TR=Q19167 /GB=AAA96070.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-3)
A 		3.6
(0.2)
A 		1.7
(-3)
A 		5.3
(3)
A 		4
B 1.6
(-3)
A 		3.6
(-1.9)
A 		12.6
(3)
A 		5.8
(-0.7)
A 		11
C 4.2
(-0.9)
A 		3.1
(-3)
A 		3.5
(-2.3)
A 		6.3
(3)
A 		3
avr 2.5
(-3) 		3.4
(-1.4) 		5.9
(3) 		5.8
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.2
(3)
A 		1.2
(-2.5)
A 		0.7
(-3)
A 		1.5
(-2.1)
A 		1.7
(-1.9)
A 		1.3
(-2.3)
A 		6
B 3.5
(1.9)
A 		1.6
(-1.4)
A 		1.4
(-1.8)
A 		4.1
(3)
A 		0.7
(-3)
A 		1.2
(-2.1)
A 		3
C 1
(-3)
A 		1.8
(-0.6)
A 		1.6
(-1.2)
A 		2.1
(0.3)
A 		3
(3)
A 		1
(-3)
A 		2
avr 3.6
(3) 		1.5
(-2.3) 		1.2
(-3) 		2.6
(0.5) 		1.8
(-1.5) 		1.2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.6
(-0)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.8
(3)
A 		0
B 0.5
(-3)
A 		0.9
(-2)
A 		2.9
(3)
A 		1.2
(-1.3)
A 		2
C 1.4
(3)
A 		0.9
(-3)
A 		1.2
(0.6)
A 		1.1
(-0.6)
A 		0
avr 0.8
(-3) 		0.9
(-2.1) 		1.5
(3) 		1
(-1.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.2
(3)
A 		0.4
(-1.8)
A 		0.2
(-3)
A 		0.4
(-1.8)
A 		0.5
(-1.2)
A 		0.3
(-2.4)
A 		1
B 1.2
(3)
A 		0.5
(-1.7)
A 		0.4
(-2.3)
A 		1.1
(2.3)
A 		0.3
(-3)
A 		0.4
(-2.3)
A 		1
C 0.4
(-2.1)
A 		0.5
(-1.3)
A 		0.4
(-2.1)
A 		0.4
(-2.1)
A 		1
(3)
A 		0.3
(-3)
A 		1
avr 0.9
(3) 		0.5
(-1) 		0.3
(-3) 		0.6
(-0) 		0.6
(-0) 		0.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172382_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18522
Sequence Type Exemplar sequence
Representative Public ID F07G6.5 NCBI
Target Description F07G6.5 /REP_DB=WormBase Gene ID /WP=CE07038 /TR=Q19167 /GB=AAA96070.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075912 NCBI Caenorhabditis elegans F07G6.5 (F07G6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000009993 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1702516:1706633:-1 10/11 None
F07G6.5 ENSEMBL cdna:known chromosome:CEL140:X:1706365:1706633:-1 gene:F07G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1706364-1706633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.5
Entrez Gene 184152 Entrez gene
SwissProt Q19167 EMBL-EBI
WormBase CE07038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508312 C36C9.5 [Caenorhabditis elegans] gb|AAC67427.1| Hypothetical protein C36C9.5 [Caenorhabditis elegans] 1.0E-141
blast NP_508313 F07G6.5 [Caenorhabditis elegans] gb|AAA96070.1| Hypothetical protein F07G6.5 [Caenorhabditis elegans] 3.0E-26
blast F88109 protein T24E12.9 [imported] - Caenorhabditis elegans 7.0E-21
blast NP_508313 F07G6.5 [Caenorhabditis elegans] gb|AAA96070.1| Hypothetical protein F07G6.5 [Caenorhabditis elegans] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172382_X_AT
tgccgtcatcaagcaacacttccaaaaaagtagcccaagggaataaaattcaaaagacca
aaccgactatgtctctgccagttcgtccccataaccctgctctccagcaacgtggcagtg
cacaagagtttcaagaacctgctaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGTCATCAAGCAACACTTCCAA 106 583 14 Antisense
GCAACACTTCCAAAAAAGTAGCCCA 218 313 26 Antisense
AATTCAAAAGACCAAACCGACTATG 234 147 60 Antisense
AGACCAAACCGACTATGTCTCTGCC 79 71 68 Antisense
CTGCTCTCCAGCAACGTGGCAGTGC 290 237 110 Antisense
CTCTCCAGCAACGTGGCAGTGCACA 269 229 113 Antisense
CTCCAGCAACGTGGCAGTGCACAAG 299 235 115 Antisense
CCAGCAACGTGGCAGTGCACAAGAG 70 273 117 Antisense
GCAACGTGGCAGTGCACAAGAGTTT 73 321 120 Antisense
GTGGCAGTGCACAAGAGTTTCAAGA 642 491 125 Antisense
ACAAGAGTTTCAAGAACCTGCTAAG 541 113 135 Antisense
Sequence Source Affymetrix Proprietary Database