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[172381_x_at]

Description ZK484.8 /REP_DB=WormBase Gene ID /WP=CE15351 /TR=O44902 /GB=AAK39386.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 13.9
(-3)
A 		38
(-1.3)
A 		45.9
(-0.7)
A 		96.6
(3)
A 		83
B 44.8
(1)
A 		21.5
(-2.4)
A 		17.5
(-3)
A 		58.7
(3)
A 		41
C 26.3
(-2.3)
A 		15
(-3)
A 		32.8
(-1.9)
A 		114.9
(3)
A 		100
avr 28.3
(-2.7) 		24.8
(-3) 		32.1
(-2.3) 		90.1
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1855
1 2 3 4 5 6 range
A 64.2
(-2.9)
A 		39.4
(-3)
A 		55.9
(-2.9)
P 		154.7
(-2.4)
P 		907
(1.3)
P 		1238.1
(3)
P 		1199
B 35.8
(-2.9)
A 		27.5
(-3)
A 		23.4
(-3)
A 		103.2
(-2.7)
P 		894.2
(0.6)
P 		1489.5
(3)
P 		1466
C 77.7
(-2.8)
A 		16.5
(-3)
A 		31.5
(-3)
A 		97.9
(-2.7)
P 		951.5
(0)
P 		1871
(3)
P 		1855
avr 59.2
(-2.9) 		27.8
(-3) 		36.9
(-3) 		118.6
(-2.6) 		917.6
(0.5) 		1532.9
(3) 		1505
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.1
(-3)
A 		8.3
(-0.9)
A 		12
(1.6)
A 		14.1
(3)
A 		9
B 14.3
(3)
A 		5.3
(-2.3)
A 		4.1
(-3)
A 		12.5
(1.9)
A 		10
C 8.7
(-1.3)
A 		4.3
(-3)
A 		11.4
(-0.2)
A 		19.4
(3)
A 		15
avr 9.4
(-0.8) 		6
(-3) 		9.2
(-0.9) 		15.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 11.8
(-3)
A 		14
(-3)
A 		12.2
(-3)
P 		39.2
(-2.4)
P 		273.7
(2.4)
P 		301.4
(3)
P 		290
B 12.5
(-2.9)
A 		9.1
(-3)
A 		5.7
(-3)
A 		27.3
(-2.8)
P 		363.3
(0.9)
P 		555.4
(3)
P 		550
C 28.8
(-2.8)
A 		5
(-3)
A 		8
(-3)
A 		19.7
(-2.9)
P 		307.9
(-0.1)
P 		626.3
(3)
P 		621
avr 17.7
(-2.9) 		9.4
(-3) 		8.6
(-3) 		28.7
(-2.8) 		315
(0.8) 		494.4
(3) 		486
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172381_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1458
Sequence Type Exemplar sequence
Representative Public ID ZK484.8 NCBI
Target Description ZK484.8 /REP_DB=WormBase Gene ID /WP=CE15351 /TR=O44902 /GB=AAK39386.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059358 NCBI Caenorhabditis elegans ZK484.8 (ZK484.8) mRNA, complete cds. 11/11 None
SNAP00000003129 ENSEMBL cdna:SNAP chromosome:CEL140:I:6105714:6105926:-1 11/11 None
GENEFINDER00000003134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6105714:6105926:-1 11/11 None
ZK484.8.2 ENSEMBL cdna:known chromosome:CEL140:I:6105714:6106028:-1 gene:ZK484.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069481 1/11 Cross Hyb Matching Probes A 
NM_069362 1/11 Cross Hyb Matching Probes A 
SNAP00000004248 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004271 1/11 Cross Hyb Matching Probes None
SNAP00000044399 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044409 1/11 Cross Hyb Matching Probes None
K07F5.5.2 1/11 Cross Hyb Matching Probes A 
K07F5.5.1 1/11 Cross Hyb Matching Probes A 
Y43C5A.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4842593-4842809(+) 90.61 90.61
chrII:4860130-4860346(-) 91.08 91.08
chrIV:10268951-10269164(-) 90.61 90.61
chrI:6105713-6105926(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.8
Entrez Gene 172292 Entrez gene
SwissProt O44902 EMBL-EBI
WormBase CE15351 Wormbase
Functional Annotations
Protein Domains
Database ID Description E-Value
Pfam IPR008498 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF780 2.3E-50
Sequence
Target Sequence 
>C. ELEGANS:172381_X_AT
atggcggacaagtcggcgtacatgggtgctggtggctatggatccggatacatgggatcc
aacgcctcatcgtcgggatatgcccgcgaagattatgcacaaggaggaaatggaggcgga
caacaacaaaaccagggaaacggaggaaacaccaacccaggaggacaggtcttcaaggcc
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGGACAAGTCGGCGTACATGG 599 53 13 Antisense
CAAGTCGGCGTACATGGGTGCTGGT 284 183 21 Antisense
CATGGGTGCTGGTGGCTATGGATCC 27 209 33 Antisense
GGTGGCTATGGATCCGGATACATGG 490 497 43 Antisense
GGATACATGGGATCCAACGCCTCAT 603 509 58 Antisense
CGCCTCATCGTCGGGATATGCCCGC 633 257 75 Antisense
GATATGCCCGCGAAGATTATGCACA 103 427 89 Antisense
GGAGGAAATGGAGGCGGACAACAAC 446 513 115 Antisense
GAGGCGGACAACAACAAAACCAGGG 493 403 125 Antisense
GAGGAAACACCAACCCAGGAGGACA 274 405 155 Antisense
CAGGAGGACAGGTCTTCAAGGCCCG 453 207 170 Antisense
Sequence Source Affymetrix Proprietary Database