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[172379_at]

Description F10C1.1 /REP_DB=WormBase Gene ID /WP=CE02617 /TR=Q19292 /GB=AAA93410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 20.1
(-3)
A 		24
(2.3)
A 		24.5
(3)
A 		22.2
(-0.1)
A 		4
B 17.8
(-1.3)
A 		21.4
(1.3)
A 		15.4
(-3)
A 		23.8
(3)
A 		8
C 18.6
(-2)
A 		27.2
(3)
A 		16.9
(-3)
A 		21.2
(-0.5)
A 		10
avr 18.8
(-3) 		24.2
(3) 		18.9
(-2.9) 		22.4
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 18.1
(-2.3)
A 		16.2
(-3)
A 		33
(3)
A 		30.9
(2.3)
A 		19.7
(-1.8)
A 		20
(-1.6)
A 		17
B 18.1
(0.4)
A 		17.9
(0.2)
A 		21
(3)
A 		14.3
(-3)
A 		17
(-0.6)
A 		20.9
(2.9)
A 		7
C 21.1
(-0.1)
A 		26.6
(3)
A 		17.2
(-2.3)
A 		24.4
(1.8)
A 		15.9
(-3)
A 		19.5
(-1)
A 		11
avr 19.1
(-1.5) 		20.2
(-0.4) 		23.7
(3) 		23.2
(2.5) 		17.5
(-3) 		20.1
(-0.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 7.3
(3)
A 		5.2
(-0.1)
A 		6.4
(1.7)
A 		3.2
(-3)
A 		4
B 5.7
(3)
A 		5.3
(1.9)
A 		3.6
(-3)
A 		5.1
(1.3)
A 		2
C 6.1
(0.6)
A 		7.8
(3)
A 		5.9
(0.3)
A 		3.6
(-3)
A 		4
avr 6.4
(3) 		6.1
(2.3) 		5.3
(0.2) 		4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.3
(-3)
A 		5.8
(0.3)
A 		7.2
(2.2)
A 		7.8
(3)
A 		5.9
(0.5)
A 		4.9
(-0.9)
A 		5
B 6.3
(0.8)
A 		6
(0.3)
A 		5.1
(-1.1)
A 		3.8
(-3)
A 		6.9
(1.7)
A 		7.8
(3)
A 		4
C 7.8
(2.5)
A 		8.1
(3)
A 		4.4
(-3)
A 		4.9
(-2.2)
A 		5.2
(-1.7)
A 		6.5
(0.4)
A 		4
avr 5.8
(-1.4) 		6.6
(3) 		5.6
(-2.5) 		5.5
(-3) 		6
(-0.3) 		6.4
(1.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4439
Sequence Type Exemplar sequence
Representative Public ID F10C1.1 NCBI
Target Description F10C1.1 /REP_DB=WormBase Gene ID /WP=CE02617 /TR=Q19292 /GB=AAA93410.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062738 NCBI Caenorhabditis elegans F10C1.1 (F10C1.1) mRNA, complete cds. 11/11 None
F10C1.1 ENSEMBL cdna:known chromosome:CEL140:II:5774194:5774385:1 gene:F10C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5774190-5774382(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10C1.1
Entrez Gene 184286 Entrez gene
SwissProt Q19292 EMBL-EBI
WormBase CE02617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495139 F10C1.1 [Caenorhabditis elegans] gb|AAA93410.1| Hypothetical protein F10C1.1 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:172379_AT
ggttcccaaaaggaatgctcaagtcccaccccttttgctcttcgatcagtgctcgcgcgg
accaccaaccggaagaagctccaccctttgtgaagagggtgtcggggaaagaggggttac
tgtaggatcaaatgaaacagatatatccagagatagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCCAAAAGGAATGCTCAAGTC 462 505 15 Antisense
CAAAAGGAATGCTCAAGTCCCACCC 225 189 21 Antisense
CGCGGACCACCAACCGGAAGAAGCT 616 255 70 Antisense
GGACCACCAACCGGAAGAAGCTCCA 657 479 73 Antisense
GACCACCAACCGGAAGAAGCTCCAC 263 383 74 Antisense
AAGAAGCTCCACCCTTTGTGAAGAG 185 153 87 Antisense
GAAGCTCCACCCTTTGTGAAGAGGG 285 343 89 Antisense
GTGAAGAGGGTGTCGGGGAAAGAGG 454 479 104 Antisense
GGAAAGAGGGGTTACTGTAGGATCA 565 523 120 Antisense
GGGGTTACTGTAGGATCAAATGAAA 639 497 127 Antisense
GAAACAGATATATCCAGAGATAGTA 687 353 148 Antisense
Sequence Source Affymetrix Proprietary Database