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[172378_x_at]

Description C32H11.7 /REP_DB=WormBase Gene ID /WP=CE19714 /TR=Q9XUH0 /GB=CAB05141.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 11.1
(-2.9)
A 		12.7
(-2.9)
A 		9
(-3)
A 		212.9
(3)
P 		204
B 15.5
(-1.6)
A 		10.5
(-2.2)
A 		3.5
(-3)
A 		56.4
(3)
A 		53
C 11.3
(-2.9)
A 		9.4
(-2.9)
A 		7.7
(-3)
A 		198.3
(3)
A 		191
avr 12.6
(-2.8) 		10.9
(-2.8) 		6.7
(-3) 		155.9
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 19.1
(-1.8)
A 		9.8
(-3)
A 		10.7
(-2.9)
A 		12.2
(-2.7)
A 		57.8
(3)
A 		11.8
(-2.8)
A 		48
B 7.6
(-2.9)
A 		9.3
(-2.8)
A 		6.3
(-3)
A 		110.4
(3)
A 		20.6
(-2.2)
A 		33.7
(-1.4)
A 		104
C 46.7
(0.2)
A 		80.7
(3)
A 		7.8
(-3)
A 		55.9
(1)
A 		15.8
(-2.3)
A 		26.4
(-1.5)
A 		73
avr 24.5
(-1.1) 		33.3
(-0.1) 		8.3
(-3) 		59.5
(3) 		31.4
(-0.3) 		24
(-1.2) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 4
(-2.7)
A 		2.8
(-2.9)
A 		2.4
(-3)
A 		31.2
(3)
P 		29
B 4.9
(-0.8)
A 		2.6
(-2)
A 		0.8
(-3)
A 		12
(3)
A 		11
C 3.7
(-2.8)
A 		2.7
(-3)
A 		2.7
(-3)
A 		33.4
(3)
A 		31
avr 4.2
(-2.4) 		2.7
(-2.8) 		2
(-3) 		25.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.5
(-2.5)
A 		3.5
(-2.5)
A 		2.3
(-3)
A 		3.1
(-2.7)
A 		17.5
(3)
A 		2.9
(-2.8)
A 		15
B 2.7
(-2.7)
A 		3.1
(-2.7)
A 		1.5
(-3)
A 		29.2
(3)
A 		8.4
(-1.5)
A 		12.6
(-0.6)
A 		28
C 17.3
(1.1)
A 		24.6
(3)
A 		2
(-3)
A 		11.3
(-0.5)
A 		5.1
(-2.2)
A 		8.8
(-1.2)
A 		23
avr 7.8
(-0.2) 		10.4
(1) 		1.9
(-3) 		14.5
(3) 		10.3
(1) 		8.1
(-0) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172378_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9311
Sequence Type Exemplar sequence
Representative Public ID C32H11.7 NCBI
Target Description C32H11.7 /REP_DB=WormBase Gene ID /WP=CE19714 /TR=Q9XUH0 /GB=CAB05141.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070068 NCBI Caenorhabditis elegans C32H11.7 (C32H11.7) mRNA, complete cds. 11/11 None
C32H11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12930677:12931590:1 gene:C32H11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075870 7/11 Cross Hyb Matching Probes B 
NM_001026670 3/11 Cross Hyb Matching Probes None
NM_171286 5/11 Cross Hyb Matching Probes B 
GENEFINDER00000001099 3/11 Cross Hyb Matching Probes None
SNAP00000001096 3/11 Cross Hyb Matching Probes None
SNAP00000005124 3/11 Cross Hyb Matching Probes None
SNAP00000011131 3/11 Cross Hyb Matching Probes None
SNAP00000023931 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023934 4/11 Cross Hyb Matching Probes None
SNAP00000038557 5/11 Cross Hyb Matching Probes None
GENEFINDER00000038565 5/11 Cross Hyb Matching Probes None
SNAP00000043336 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043343 5/11 Cross Hyb Matching Probes None
Y38F2AL.6 5/11 Cross Hyb Matching Probes B 
W05H7.2 7/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12930682-12931596(+) 94.05 100.0
chrX:1435092-1436017(+) 93.1 99.05
chrIV:2330282-2331206(-) 92.62 98.57
Public Domain and Genome References
Gene Title
Ensembl C32H11.7
Entrez Gene 183131 Entrez gene
SwissProt Q9XUH0 EMBL-EBI
WormBase CE19714 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05141 Hypothetical protein C32H11.7 [Caenorhabditis elegans] ref|NP_502469.1| C32H11.7 [Caenorhabditis elegans] 2.0E-68
blast NP_741337 Y38F2AL.6 [Caenorhabditis elegans] gb|AAL32237.1| Hypothetical protein Y38F2AL.6 [Caenorhabditis elegans] 9.0E-42
Sequence
Target Sequence 
>C. ELEGANS:172378_X_AT
cgacactccgaaataaccctagcgcgccctctttagcgaaaattttattcaatttttttt
ccattttttgcaatttttctcgtttttttcacgattaccgcgtgattttaaaatcaacga
aaaggatccttcaaaacgatggaataggaaaaagatgccaaaaatcaggagtgtcgccgg
caccgactccgaacgagaaaagctccgacgaccgcaaacgagagccgaaggaatccggaa
agcgaagaccgaattacgatcaacgacacaagattggaacttcctgccccactcttgaag
agcacgccgatttcgaggttttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACACTCCGAAATAACCCTAGCGC 127 253 29 Antisense
AGCGCGCCCTCTTTAGCGAAAATTT 632 81 49 Antisense
TCCATTTTTTGCAATTTTTCTCGTT 553 591 88 Antisense
TCTCGTTTTTTTCACGATTACCGCG 174 609 106 Antisense
AAAAATCAGGAGTGTCGCCGGCACC 343 127 188 Antisense
GGCACCGACTCCGAACGAGAAAAGC 423 533 207 Antisense
GAACGAGAAAAGCTCCGACGACCGC 108 345 219 Antisense
GACGACCGCAAACGAGAGCCGAAGG 257 379 235 Antisense
AGACCGAATTACGATCAACGACACA 668 69 274 Antisense
CACAAGATTGGAACTTCCTGCCCCA 338 193 295 Antisense
GAGCACGCCGATTTCGAGGTTTTCG 117 389 328 Antisense
Sequence Source Affymetrix Proprietary Database