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[172377_x_at]

Description D2062.6 /REP_DB=WormBase Gene ID /WP=CE09093 /TR=O16596 /GB=AAB66067.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 7.1
(-2.4)
A 		10.5
(3)
A 		6.7
(-3)
A 		8.9
(0.5)
A 		4
B 6.1
(-3)
A 		9.9
(3)
A 		8
(0)
A 		9.4
(2.2)
A 		4
C 4.9
(-3)
A 		7.1
(-2.9)
A 		7.7
(-2.9)
A 		128.6
(3)
A 		124
avr 6
(-3) 		9.2
(-2.6) 		7.5
(-2.8) 		49
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 9.2
(-2.9)
A 		3.8
(-3)
A 		7.9
(-2.9)
A 		9.8
(-2.8)
A 		137.6
(0.6)
A 		226.6
(3)
A 		223
B 5.8
(-2.9)
A 		3.7
(-3)
A 		10.1
(-2.7)
A 		8.1
(-2.8)
A 		116.3
(3)
A 		85.3
(1.3)
A 		113
C 3.6
(-3)
A 		6
(-2.9)
A 		8.2
(-2.8)
A 		10.4
(-2.7)
A 		112.1
(1.9)
A 		136.8
(3)
A 		133
avr 6.2
(-2.9) 		4.5
(-3) 		8.7
(-2.8) 		9.4
(-2.8) 		122
(1.9) 		149.6
(3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.6
(3)
A 		2.3
(1.6)
A 		1.8
(-0.7)
A 		1.3
(-3)
A 		1
B 1.9
(-2)
A 		2.4
(3)
A 		1.8
(-3)
A 		2
(-1)
A 		1
C 1.6
(-3)
A 		2
(-2.9)
A 		2.7
(-2.7)
A 		21.7
(3)
A 		20
avr 2
(-3) 		2.2
(-2.8) 		2.1
(-2.9) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1.4
(-3)
A 		1.7
(-3)
A 		2.5
(-2.9)
A 		41.5
(1.5)
A 		55.2
(3)
A 		54
B 2
(-2.9)
A 		1.2
(-3)
A 		2.5
(-2.8)
A 		2.2
(-2.9)
A 		47.3
(3)
A 		31.8
(1)
A 		46
C 1.3
(-3)
A 		1.8
(-2.9)
A 		2.1
(-2.9)
A 		2.1
(-2.9)
A 		36.3
(1.7)
A 		45.8
(3)
A 		45
avr 1.7
(-3) 		1.5
(-3) 		2.1
(-2.9) 		2.3
(-2.9) 		41.7
(2.6) 		44.3
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172377_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4381
Sequence Type Exemplar sequence
Representative Public ID D2062.6 NCBI
Target Description D2062.6 /REP_DB=WormBase Gene ID /WP=CE09093 /TR=O16596 /GB=AAB66067.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061906 NCBI Caenorhabditis elegans D2062.6 (D2062.6) mRNA, complete cds. 11/11 None
SNAP00000009051 ENSEMBL cdna:SNAP chromosome:CEL140:II:2619449:2619721:1 11/11 None
GENEFINDER00000009061 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2619449:2619721:1 11/11 None
D2062.6 ENSEMBL cdna:known chromosome:CEL140:II:2619449:2619721:1 gene:D2062.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061905 4/11 Cross Hyb Matching Probes A 
SNAP00000009049 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009062 4/11 Cross Hyb Matching Probes None
D2062.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2619447-2619720(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2062.6
Entrez Gene 173607 Entrez gene
SwissProt O16596 EMBL-EBI
WormBase CE09093 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494307 D2062.6 [Caenorhabditis elegans] gb|AAB66067.1| Hypothetical protein D2062.6 [Caenorhabditis elegans] 1.0E-34
blast AAC78181 Hypothetical protein F46F5.9 [Caenorhabditis elegans] ref|NP_493822.1| F46F5.9 [Caenorhabditis elegans] 6.0E-13
blast AAC78182 Hypothetical protein F46F5.6 [Caenorhabditis elegans] ref|NP_493819.1| F46F5.6 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494307.1 1 7-24
D2062.6 1 7-24
SNAP00000009051 1 7-24
GENEFINDER00000009061 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:172377_X_AT
gtcaaacgactgccatctttgttctccttgggcttctcgccgtctttgtggtccaaggat
caactgaagacactggttcaactccaactgcagataatgctcctgctgcatctaatggca
ccgcagcacctctttcaactgcaaatgaaacatcagctgacccggctggaactcctgaac
aagctgctgaagcaactgtatcatcattcacttcaatccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAACGACTGCCATCTTTGTTCT 274 463 20 Antisense
CGCCGTCTTTGTGGTCCAAGGATCA 282 257 57 Antisense
AGACACTGGTTCAACTCCAACTGCA 530 71 87 Antisense
CAGATAATGCTCCTGCTGCATCTAA 571 205 110 Antisense
CTGCATCTAATGGCACCGCAGCACC 99 229 125 Antisense
CGCAGCACCTCTTTCAACTGCAAAT 257 255 141 Antisense
TGAAACATCAGCTGACCCGGCTGGA 185 573 165 Antisense
CTGGAACTCCTGAACAAGCTGCTGA 478 241 185 Antisense
AGCTGCTGAAGCAACTGTATCATCA 350 81 201 Antisense
AGCAACTGTATCATCATTCACTTCA 246 77 210 Antisense
GTATCATCATTCACTTCAATCCACT 95 455 217 Antisense
Sequence Source Affymetrix Proprietary Database