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[172376_x_at]

Description Y43F8C.9 /REP_DB=WormBase Gene ID /WP=CE21907 /TR=Q9XWN0 /GB=CAA21621.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.8
(-2.4)
A 		17.1
(3)
A 		6.5
(-2.6)
A 		5.7
(-3)
A 		11
B 4
(-3)
A 		4.6
(-2.4)
A 		4.7
(-2.3)
A 		9.7
(3)
A 		6
C 7.1
(-1.4)
A 		15.9
(3)
A 		3.8
(-3)
A 		8.1
(-0.9)
A 		12
avr 6
(-2.2) 		12.5
(3) 		5
(-3) 		7.8
(-0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 10
(-2.8)
A 		4.8
(-3)
A 		3.6
(-3)
A 		4.9
(-3)
A 		119.1
(0.4)
A 		209.1
(3)
A 		206
B 2.5
(-3)
A 		3.3
(-3)
A 		7.2
(-2.8)
A 		4.1
(-2.9)
A 		38
(-1.6)
A 		152.2
(3)
A 		150
C 5
(-3)
A 		4.3
(-3)
A 		4
(-3)
A 		10.2
(-2.8)
A 		111.9
(0.8)
A 		176.6
(3)
A 		173
avr 5.8
(-2.9) 		4.1
(-3) 		4.9
(-3) 		6.4
(-2.9) 		89.7
(-0.1) 		179.3
(3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.5
(0.5)
A 		3.7
(3)
A 		1.7
(-1.1)
A 		0.8
(-3)
A 		3
B 1.3
(-1.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2.1
(3)
A 		1
C 2.4
(-1)
A 		4.6
(3)
A 		1.3
(-3)
A 		1.4
(-2.8)
A 		3
avr 2.1
(-0.5) 		3.1
(3) 		1.4
(-3) 		1.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		1.7
(-2.9)
A 		0.8
(-3)
A 		1.2
(-3)
A 		36
(1.2)
A 		50.9
(3)
A 		50
B 0.9
(-3)
A 		1.1
(-3)
A 		1.7
(-2.9)
A 		1.1
(-3)
A 		15.5
(-1.4)
A 		56.8
(3)
A 		56
C 1.9
(-2.9)
A 		1.3
(-3)
A 		1
(-3)
A 		2
(-2.9)
A 		36.2
(0.6)
A 		59.1
(3)
A 		58
avr 1.5
(-3) 		1.4
(-3) 		1.2
(-3) 		1.4
(-3) 		29.2
(0.1) 		55.6
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172376_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13951
Sequence Type Exemplar sequence
Representative Public ID Y43F8C.9 NCBI
Target Description Y43F8C.9 /REP_DB=WormBase Gene ID /WP=CE21907 /TR=Q9XWN0 /GB=CAA21621.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075408 NCBI Caenorhabditis elegans Y43F8C.9 (Y43F8C.9) mRNA, complete cds. 11/11 None
Y43F8C.9 ENSEMBL cdna:known chromosome:CEL140:V:19648689:19649895:1 gene:Y43F8C.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19648688-19649857(+) 81.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.9
Entrez Gene 180288 Entrez gene
SwissProt Q9XWN0 EMBL-EBI
WormBase CE21907 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21621 Hypothetical protein Y43F8C.9 [Caenorhabditis elegans] ref|NP_507809.1| Y43F8C.9 [Caenorhabditis elegans] 4.0E-29
Sequence
Target Sequence 
>C. ELEGANS:172376_X_AT
ttccttctcgttgttctttgtacagctgcacaggagaaaccaccgactgcaattacacca
cgatcccaagatgaaatcgaaaaagagtttgagttgtttctaatggccgacacggatcct
cctacgacaacaacaaccactaccactaccacaactaccaccaccactactacaccgcca
ccgccaccgccgccaactattcagaagtctgctgcagtgtcacctgaatcggcctcttcc
aattccatcaatatcctcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCTCGTTGTTCTTTGTACAG 229 699 37 Antisense
GTTGTTCTTTGTACAGCTGCACAGG 71 439 46 Antisense
GTACAGCTGCACAGGAGAAACCACC 678 459 56 Antisense
GAGAAACCACCGACTGCAATTACAC 699 391 70 Antisense
CAATTACACCACGATCCCAAGATGA 400 179 86 Antisense
GTTTGAGTTGTTTCTAATGGCCGAC 595 451 123 Antisense
TTCTAATGGCCGACACGGATCCTCC 298 691 134 Antisense
CCGCCGCCAACTATTCAGAAGTCTG 293 263 223 Antisense
CAGAAGTCTGCTGCAGTGTCACCTG 401 205 238 Antisense
TCTGCTGCAGTGTCACCTGAATCGG 448 609 244 Antisense
TTCCAATTCCATCAATATCCTCGTC 182 701 273 Antisense
Sequence Source Affymetrix Proprietary Database